PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.004G128200.2 | ||||||||
Common Name | B456_004G128200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 303aa MW: 33804.4 Da PI: 9.7897 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98.9 | 3e-31 | 2 | 90 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Gorai.004G128200.2 2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRG 90 89***************************966778999*************************************************54 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-39 | 1 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.90E-27 | 1 | 89 | No hit | No description |
SuperFamily | SSF101936 | 2.62E-29 | 1 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.2E-21 | 2 | 103 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.804 | 2 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-28 | 2 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS 60 SQSYVMTKGW SRFVKDKKLD AGDIVSFQRG AGEVGKDRFF IDSKRKPDAP TLVSFHPHQH 120 YFSLGRSIPW NPLLMRPPPT GRDHLYLSPV NPINRRNSYY GGYPTGSNVV NPGDTVGSLF 180 YLRSAVGSGA PQMGMTQRQQ QGGVVEPIVF DSVPVVQSKA APKRMRLFGV NMECPMPESD 240 ECEMLTTSTL AHATMAPQHP DQPPSSSQHP LQLRLYNGTP LPPTDFLNAN KGKASLSFDL 300 DT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-61 | 1 | 107 | 7 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-61 | 1 | 107 | 7 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474749.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 | ||||
TrEMBL | A0A0D2QWV6 | 0.0 | A0A0D2QWV6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G128200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46870.1 | 9e-73 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.004G128200.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|