PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G125900.2 | ||||||||
Common Name | B456_004G125900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 50682.1 Da PI: 5.5506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.4 | 3.2e-54 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeel+++yL++k++gk++++ evi+e+d++k+ePwdLp+ ++++++ ew+fF++ d+ky++g+r nrat++gyWkatgkd Gorai.004G125900.2 9 LPIGFRFRPTDEELIHFYLRAKINGKRNDEVEVIREIDVCKCEPWDLPHmsAIQTRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKD 99 699************************9999*****************4347777888********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s +++l+g+kk+Lvfy+grap+g++t+Wvmheyr Gorai.004G125900.2 100 RKIKS-GSSLIGMKKSLVFYTGRAPRGKRTNWVMHEYRT 137 *****.99*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-59 | 4 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.154 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MAVLSLNSLP IGFRFRPTDE ELIHFYLRAK INGKRNDEVE VIREIDVCKC EPWDLPHMSA 60 IQTRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSSLIG MKKSLVFYTG 120 RAPRGKRTNW VMHEYRTTLI ELDGTKPGQN PFVICRLFKK QDESIEDTNG DEVDVSSPTE 180 DMQSELEGPE DSPALEGVAQ PKFPHNNGTC SGGLPNEVVS NAVPPMLECN IVDSKAYSVT 240 GQVAEIVTDK VDQVGEALNH FYDPMVEPPD CKFFSPLRSQ VEAEQAPWMF HQVGSSLSAV 300 DVDSSSQQYS ANESETPKTM AVVEDGRIRS EQDAEVAQVL MIGSQLGREI ADKGTPLEIK 360 ATAQDCTIPI NKDIVLNSKE EPSNHVTTTC NLDNAITGIR IRPHAAQSQT NIKNSVTQGY 420 APRRIRLQCK LQVGTYYSEG KKDGSKPVVT KVRNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-43 | 4 | 164 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-43 | 4 | 164 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-43 | 4 | 164 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-43 | 4 | 164 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-43 | 4 | 164 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-43 | 4 | 164 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-43 | 4 | 164 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474699.1 | 0.0 | PREDICTED: NAC domain-containing protein 62 | ||||
TrEMBL | A0A0D2MXG4 | 0.0 | A0A0D2MXG4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G125900.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-92 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G125900.2 |
Publications ? help Back to Top | |||
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