PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G123500.1 | ||||||||
Common Name | B456_004G123500, LOC105791228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 26906.1 Da PI: 6.5256 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.5e-20 | 30 | 84 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++f++eq++ Le+ Fe++ ++ +++ +LA++lgL+ rqV +WFqNrRa++k Gorai.004G123500.1 30 KQKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWK 84 56789*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126 | 1.7e-40 | 31 | 122 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +krr+s+eq++lLE+ Fe+e+kLep++K++lareLglqprqva+WFqnrRAR+k+kq+E+dy++Lk++yd+l+++ e+L+ke+++L +++ Gorai.004G123500.1 31 QKRRFSDEQIRLLESIFESETKLEPRKKMQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYNTLKANYDNLESRFESLKKEKHSLILQIQ 121 79************************************************************************************98887 PP HD-ZIP_I/II 93 e 93 + Gorai.004G123500.1 122 K 122 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-20 | 20 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.479 | 26 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-18 | 28 | 90 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.8E-17 | 30 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-20 | 32 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.24E-15 | 33 | 87 | No hit | No description |
PRINTS | PR00031 | 4.3E-6 | 57 | 66 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 61 | 84 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.3E-6 | 66 | 82 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.7E-15 | 86 | 127 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEREYHPAAD EAIAEQAPQT PKNKKKNKMK QKRRFSDEQI RLLESIFESE TKLEPRKKMQ 60 LARELGLQPR QVAIWFQNRR ARWKSKQIEQ DYNTLKANYD NLESRFESLK KEKHSLILQI 120 QKLSELLEEP HKGGKGLDGS STGGGGGSEY GETKCETEVE AQPSFQHKEC LGLQTENERG 180 DIKQTGQGGE EFLIMDEYKN DSPASPDKFY GLHSVDMFDH SYTNCQWLNF WT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 86 | RRARWKSKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474657.1 | 1e-174 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A0D2RY48 | 1e-172 | A0A0D2RY48_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G123500.1 | 1e-173 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18999 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-45 | homeobox 7 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G123500.1 |
Entrez Gene | 105791228 |
Publications ? help Back to Top | |||
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