PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G122800.1

Common Name

B456_004G122800, LOC105791221

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 271aa MW: 29969.4 Da PI: 8.8921

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G122800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	31	90	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk++ Gorai.004G122800.1 31 NDHALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRA 90 67899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	27	88	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-34	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDSAQRPQGI EVVKPMEASR GMVERRTRPQ NDHALNCPRC NSTNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRA LSSSSPPRPP ASSKKLGDLT TPPTPQNPKI 120 HEGQDLNLAY PPPTEDYNSL PKFVEVPYSH KSDHRNSTSS STHLNAMELL KTGINSRGLS 180 SFMSMSVSDS NTVYSSGFPM QDFKPTLNFS LDGLETGYGN LQGVEESGAR LFFPMEELKL 240 VPSNANELEQ NRGQGESTGY WNGMLGGGHW *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527215	1e-122	HQ527215.1 Gossypium herbaceum clone NBRI_B_EYI1BW404H55EM simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474644.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A0D2R3F6	0.0	A0A0D2R3F6_GOSRA; Uncharacterized protein
STRING	Gorai.004G122800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-46	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G122800.1
Entrez Gene	105791221

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]