PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G120700.2

Common Name

B456_004G120700, LOC105791195

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 748aa MW: 82193.7 Da PI: 5.8455

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G120700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3.2e-21	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t+ q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Gorai.004G120700.2 54 KKKYHRHTPRQIQELESFFKECPHPDEKQRMELSRRLGLEGKQIKFWFQNRRTQMK 109 79999************************************************999 PP
2	START	166.9	1.4e-52	255	477	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 +a++a++el+k+a+ + p+W k es+n +e+ ++f++ + + +ea +a+g+v lve l+d + +W e+++ +a Gorai.004G120700.2 255 VALSAMDELIKMAQMDNPLWIKGLgggmESLNVEEYKRNFSSCIGmksssYATEATKATGLVYLRGLALVEALMDAN-RWVEMFPcmisRA 344 7899**********************************88887999999**********************.********* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +t++v+ssg ++lq+m ae+q+lsplvp R + f+R+++q+++g+w++vdvS+d+ q+ + ++ + +++lpSg++i++++ sk Gorai.004G120700.2 345 ATIDVLSSGtgvtrdNELQVMDAEFQVLSPLVPvRQVRFIRFCKQHSEGVWAVVDVSIDPSQDATDTHMFPNCRRLPSGCVIQDVDTKCSK 435 ************************************************************99********************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +twveh +++++ +h ll++l++sg +ga +w+atlqrqc Gorai.004G120700.2 436 ITWVEHSEYDDNAVHHLLQPLLSSGFGFGAHRWLATLQRQCD 477 **************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-22	41	111	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.22E-20	42	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	51	111	IPR001356	Homeobox domain
SMART	SM00389	1.3E-18	53	115	IPR001356	Homeobox domain
Pfam	PF00046	7.8E-19	54	109	IPR001356	Homeobox domain
CDD	cd00086	1.77E-19	54	111	No hit	No description
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.174	245	481	IPR002913	START domain
SuperFamily	SSF55961	1.51E-29	247	477	No hit	No description
CDD	cd08875	2.26E-103	249	476	No hit	No description
SMART	SM00234	3.9E-34	254	478	IPR002913	START domain
Pfam	PF01852	3.9E-45	255	477	IPR002913	START domain
SuperFamily	SSF55961	4.67E-19	507	741	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MDGHGEMGLI GENFDPGFVG RMKEDGYEIR SESDNFDVAS GDDQDAAADG PSKKKKYHRH 60 TPRQIQELES FFKECPHPDE KQRMELSRRL GLEGKQIKFW FQNRRTQMKT QLERHENVIL 120 RQENDKLRAE NDLLKQAMTT PICNSCGGPA VPGEISYEQH QLRIENARLK DELTRICALT 180 NKFLGRPLSS SGSPIPPHSL NSNLELAVGR NGFGGLNNAG TSLPMGFEFG DGSMMPIVKP 240 MVNEMQYDRS AFVDVALSAM DELIKMAQMD NPLWIKGLGG GMESLNVEEY KRNFSSCIGM 300 KSSSYATEAT KATGLVYLRG LALVEALMDA NRWVEMFPCM ISRAATIDVL SSGTGVTRDN 360 ELQVMDAEFQ VLSPLVPVRQ VRFIRFCKQH SEGVWAVVDV SIDPSQDATD THMFPNCRRL 420 PSGCVIQDVD TKCSKITWVE HSEYDDNAVH HLLQPLLSSG FGFGAHRWLA TLQRQCDCMA 480 ILMSQDIPGE NNTGITPAGR KSMIKLAQRM TYNFCAGVCA SSIHKWDKLS VGNVGEDVRV 540 MTRKNINDPG EPHGVVLSAA TSVWMPVTQE RLFDFLRDER MRSEWDILSN GGPMQEMVHV 600 AKGMGHGNCV SLLRGSAINA NENNMLILQE TWSDASGALV VYAPVDISSM SVVMNGGDSA 660 YVALLPSGFA ILPGISPSYH GGRSESNGAL VKPEIDGSIV SGCLLTVGFQ ILVNNVPTAK 720 LTVESVETVN NLISCTIQKI KAALTVT*

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MDGHGEMGLI GENFDPGFVG RMKEDGYEIR SESDNFDVAS GDDQDAAADG PSKKKKYHRH  60
TPRQIQELES FFKECPHPDE KQRMELSRRL GLEGKQIKFW FQNRRTQMKT QLERHENVIL  120
RQENDKLRAE NDLLKQAMTT PICNSCGGPA VPGEISYEQH QLRIENARLK DELTRICALT  180
NKFLGRPLSS SGSPIPPHSL NSNLELAVGR NGFGGLNNAG TSLPMGFEFG DGSMMPIVKP  240
MVNEMQYDRS AFVDVALSAM DELIKMAQMD NPLWIKGLGG GMESLNVEEY KRNFSSCIGM  300
KSSSYATEAT KATGLVYLRG LALVEALMDA NRWVEMFPCM ISRAATIDVL SSGTGVTRDN  360
ELQVMDAEFQ VLSPLVPVRQ VRFIRFCKQH SEGVWAVVDV SIDPSQDATD THMFPNCRRL  420
PSGCVIQDVD TKCSKITWVE HSEYDDNAVH HLLQPLLSSG FGFGAHRWLA TLQRQCDCMA  480
ILMSQDIPGE NNTGITPAGR KSMIKLAQRM TYNFCAGVCA SSIHKWDKLS VGNVGEDVRV  540
MTRKNINDPG EPHGVVLSAA TSVWMPVTQE RLFDFLRDER MRSEWDILSN GGPMQEMVHV  600
AKGMGHGNCV SLLRGSAINA NENNMLILQE TWSDASGALV VYAPVDISSM SVVMNGGDSA  660
YVALLPSGFA ILPGISPSYH GGRSESNGAL VKPEIDGSIV SGCLLTVGFQ ILVNNVPTAK  720
LTVESVETVN NLISCTIQKI KAALTVT*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474603.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A0D2MX63	0.0	A0A0D2MX63_GOSRA; Uncharacterized protein
STRING	Gorai.004G120700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G120700.2
Entrez Gene	105791195

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]