PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G113000.1
Common NameB456_004G113000, LOC105791098
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 419aa    MW: 47087.4 Da    PI: 4.8667
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G113000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box31.24.4e-101661342
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        +r C+ + +k+++++C d++ +lC+ C ++ H+       H++v+l
  Gorai.004G113000.1 16 ARACDGCLQKRARWYCADDDAFLCQGCDTSVHSAnqlasrHERVSL 61
                        578*****************************66889999998875 PP
2CCT68.22.2e-23362405144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Gorai.004G113000.1 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 405
                         9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7361461IPR000315B-box-type zinc finger
SMARTSM003362.9E-111461IPR000315B-box-type zinc finger
PfamPF006431.1E-81661IPR000315B-box-type zinc finger
CDDcd000214.56E-91761No hitNo description
PROSITE profilePS5101716.083362404IPR010402CCT domain
PfamPF062035.5E-18362404IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MITDKKAANV MGGKTARACD GCLQKRARWY CADDDAFLCQ GCDTSVHSAN QLASRHERVS  60
LQTASSNFNA SMHSTIDQDA PPAWHQGFTR KARTARQNKP MLGQQKGEGT VLALNPIDPF  120
VPEVGSEEGS VDENEEQLLC RVPVFDPFSE ELCNMVTSDC DEVATPNEDG NLVVDGYEHE  180
RTYELDDSLH GFLPSDLDLA NFAADVESLL GVRLDEDSCD IKKIESLDCT DENGSELFHE  240
RKIMKVEEEE EVEGITACFC ESAFEVTRAS LNWTFDYDSL IITEEEEKEI PVAKTKRNKL  300
LRLNYESVIT AWASQGSRTT GTRPELNPDD FMGSYPKDEH HQNGGIGGIN RPVRANNTDG  360
EREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFVGL GTAFPYTN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372388RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.11960.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488806590.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5845342e-79JX584534.1 Gossypium hirsutum clone NBRI_GE17865 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474459.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A0D2MWT90.0A0A0D2MWT9_GOSRA; Uncharacterized protein
STRINGGorai.004G113000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16600813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-86B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]