PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G088400.1 | ||||||||
Common Name | B456_004G088400, LOC105790811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 544aa MW: 59120.3 Da PI: 8.6165 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gorai.004G088400.1 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.5 | 5e-05 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Gorai.004G088400.1 156 WKCDKCSKKYAVQSDWKAHQKTC 178 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.5E-8 | 79 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 79 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 80 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 98 | 121 | 151 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 144 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.5E-8 | 151 | 177 | No hit | No description |
SMART | SM00355 | 94 | 156 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MSNMSGDDDG SFSSGEEVQQ QKQLLQNNFA ASGSGPSAAS NSNNGSQQAV KKKRNLPGTP 60 DPNAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTTTEVKKRV 120 YICPEPTCVH HNPARALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHQKTCGT 180 REYKCDCGTI FSRRDSFITH RAFCDALAEE NNKVNQGLMN NMGSNMQNQM PELISSMQTS 240 NGISDLGNFD PKSPLKSHPQ ELVPMPFMSM NMGGGMFSSS SSSLFGGPRS VSSASSSLQL 300 SSNSSSGLNY LQDSKNGCPI MSATALLQKA AQMGATASNS INSPMMQKSF ASSMAGPEQT 360 IRPPSFGGIQ QQNTSYDHFP SQTDQTSMVG ISEAGGFSNP FMQKSPSEMA QLFTAATGSS 420 AMNEMGMFTN MFINGADRNQ VGLMKSMEQE DSGSSSLLQG RTQLPAAMFG TSSGNGGSNM 480 TTLDFMGIGG SRPNSLHEQQ QQQQQRMELE AISQQRLPMI NPFHLQQQLS HGDSAIEKPI 540 WEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-34 | 152 | 221 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 5e-34 | 152 | 221 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614773 | 1e-110 | JX614773.1 Gossypium hirsutum clone NBRI_GE58407 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474035.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 1e-116 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A0D2RVW1 | 0.0 | A0A0D2RVW1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G088400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15443 | 8 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 8e-99 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G088400.1 |
Entrez Gene | 105790811 |
Publications ? help Back to Top | |||
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