PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G088100.2

Common Name

B456_004G088100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 737aa MW: 81719.8 Da PI: 8.4343

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G088100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.7	3.3e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e++++ g+t +qV+ +F +R++ +k Gorai.004G088100.2 69 KRPRDLLNPKAVKYMQAVFSIKDAITKKESREISAQFGVTVTQVRDFFNSQRTRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.511	66	126	IPR001356	Homeobox domain
SMART	SM00389	4.9E-5	68	130	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-7	68	131	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-4	69	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-7	69	137	IPR009057	Homeodomain-like
CDD	cd00086	1.36E-5	69	126	No hit	No description
Gene3D	G3DSA:1.20.930.10	2.6E-5	226	318	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	2.22E-5	227	317	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence Send to blast
MDVLKENLAE LEIGSTVESI QKFIEIQREL FHSQIDQLQN VVVTQCKLTG VNPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISAQFGVTVT QVRDFFNSQR 120 TRVRKQVRLS REKALRSNAC KEAEDGVLPT GSEAVIPVEP VPLNSVGPVS SEEAPSCSTQ 180 DDSLTGIDEL DKHFVENIFS KMHKEETFSG QVKLMEWILQ IQNPSVLYWF LNKGGVMILA 240 TWLSQAAVEE QTTVVLIILK VLSHLPLQKA LPEHMSAILQ SVNKLCLYRF SDISNRARLL 300 ISRWSKMFAR SQAAKKPNGL RSSTETQNEM LLKQSISEIM GHGSWQSNVY NSEGTLATSN 360 VRKESPQVLK LLPASMDDSA KKNLLGVSSS HSRERRRVQL VEQPGQKVAG KNSQTTRPVP 420 ISQSRPMSAD DIQKAKMRAL YMQSKHGKTG SSSNGMNEVK SEGLNKSSPS KASFSRPVSK 480 VSSHPAEEQK KPVVLPPKTS SRVETSLDPK QPVASKESPW EKCQKVKIPW HIPPEVKIND 540 LWSVGAGESS KEVHVQKNRN RRERETFYYT NQEIPSNPKE PWDREMDHDD SLTPEIPTEQ 600 PPDNETETQV THGEHVNGAA TLEPSTSQTG GAVSAEPDLE LLAVLLKNPA LVFALTSGQA 660 GNLTSEETVK LLDMIKAGGA DTGNNVEEKV EVSLPSPTPS TNPGTVRDII GFYQEFIFSF 720 NWGIHISYKI KNENYM*

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence Send to blast

MDVLKENLAE LEIGSTVESI QKFIEIQREL FHSQIDQLQN VVVTQCKLTG VNPLAQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISAQFGVTVT QVRDFFNSQR  120
TRVRKQVRLS REKALRSNAC KEAEDGVLPT GSEAVIPVEP VPLNSVGPVS SEEAPSCSTQ  180
DDSLTGIDEL DKHFVENIFS KMHKEETFSG QVKLMEWILQ IQNPSVLYWF LNKGGVMILA  240
TWLSQAAVEE QTTVVLIILK VLSHLPLQKA LPEHMSAILQ SVNKLCLYRF SDISNRARLL  300
ISRWSKMFAR SQAAKKPNGL RSSTETQNEM LLKQSISEIM GHGSWQSNVY NSEGTLATSN  360
VRKESPQVLK LLPASMDDSA KKNLLGVSSS HSRERRRVQL VEQPGQKVAG KNSQTTRPVP  420
ISQSRPMSAD DIQKAKMRAL YMQSKHGKTG SSSNGMNEVK SEGLNKSSPS KASFSRPVSK  480
VSSHPAEEQK KPVVLPPKTS SRVETSLDPK QPVASKESPW EKCQKVKIPW HIPPEVKIND  540
LWSVGAGESS KEVHVQKNRN RRERETFYYT NQEIPSNPKE PWDREMDHDD SLTPEIPTEQ  600
PPDNETETQV THGEHVNGAA TLEPSTSQTG GAVSAEPDLE LLAVLLKNPA LVFALTSGQA  660
GNLTSEETVK LLDMIKAGGA DTGNNVEEKV EVSLPSPTPS TNPGTVRDII GFYQEFIFSF  720
NWGIHISYKI KNENYM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds.

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474033.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0D2P924	0.0	A0A0D2P924_GOSRA; Uncharacterized protein
STRING	Gorai.004G088100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-180	HB-other family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G088100.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]