PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G088100.1 | ||||||||
Common Name | B456_004G088100, LOC105790808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 1010aa MW: 110968 Da PI: 9.31 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.2 | 4.9e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e++++ g+t +qV+ +F +R++ +k Gorai.004G088100.1 69 KRPRDLLNPKAVKYMQAVFSIKDAITKKESREISAQFGVTVTQVRDFFNSQRTRVRK 125 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.511 | 66 | 126 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-7 | 68 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-5 | 68 | 130 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-4 | 69 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-7 | 69 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.68E-5 | 69 | 126 | No hit | No description |
Gene3D | G3DSA:1.20.930.10 | 4.0E-5 | 226 | 318 | IPR017923 | Transcription factor IIS, N-terminal |
SuperFamily | SSF47676 | 3.4E-5 | 227 | 317 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1010 aa Download sequence Send to blast |
MDVLKENLAE LEIGSTVESI QKFIEIQREL FHSQIDQLQN VVVTQCKLTG VNPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISAQFGVTVT QVRDFFNSQR 120 TRVRKQVRLS REKALRSNAC KEAEDGVLPT GSEAVIPVEP VPLNSVGPVS SEEAPSCSTQ 180 DDSLTGIDEL DKHFVENIFS KMHKEETFSG QVKLMEWILQ IQNPSVLYWF LNKGGVMILA 240 TWLSQAAVEE QTTVVLIILK VLSHLPLQKA LPEHMSAILQ SVNKLCLYRF SDISNRARLL 300 ISRWSKMFAR SQAAKKPNGL RSSTETQNEM LLKQSISEIM GHGSWQSNVY NSEGTLATSN 360 VRKESPQVLK LLPASMDDSA KKNLLGVSSS HSRERRRVQL VEQPGQKVAG KNSQTTRPVP 420 ISQSRPMSAD DIQKAKMRAL YMQSKHGKTG SSSNGMNEVK SEGLNKSSPS KASFSRPVSK 480 VSSHPAEEQK KPVVLPPKTS SRVETSLDPK QPVASKESPW EKCQKVKIPW HIPPEVKIND 540 LWSVGAGESS KEVHVQKNRN RRERETFYYT NQEIPSNPKE PWDREMDHDD SLTPEIPTEQ 600 PPDNETETQV THGEHVNGAA TLEPSTSQTG GAVSAEPDLE LLAVLLKNPA LVFALTSGQA 660 GNLTSEETVK LLDMIKAGGA DTGNNVEEKV EVSLPSPTPS TNPGTSGWRP EAVRNPFSQH 720 SQMGNRVAQA SVGVVTPIPV AERLSATGMA APQQEANGLS LAQQLAAAMA ELLPQSNATT 780 LDKRHSPNVA FSNHGHPSNL PASDIALTMK NPSLVNSLTN SSAAAGPSMW VETMNVKTAA 840 ISMAPHIPEK VHTSFSPSPL MPTLTQRQTP AQLQPQVPHA SDPYSTRPPV GNLGPMPDPW 900 RGRQSLGSNL HSQANQNNYN ASSFGGSMHP QLRTDPPREG KEYAGNEGFE SWSPDNSPNR 960 SSEYVAGRNY MEPRMNSGWN YRADRPSWQG NSSGYRDPNR QGNRWRDRR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012474033.1 | 0.0 | PREDICTED: homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 1e-180 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A0D2QUG6 | 0.0 | A0A0D2QUG6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G088100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-176 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G088100.1 |
Entrez Gene | 105790808 |
Publications ? help Back to Top | |||
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