PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G086700.2
Common NameB456_004G086700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 337aa    MW: 35984.1 Da    PI: 8.1975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G086700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-115076127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ + C +++rtG+C yG+rC+++H++
  Gorai.004G086700.2 50 PGVPDCVYYMRTGFCGYGNRCRYNHPR 76
                        57899********************96 PP
2zf-CCCH35.61.6e-11161187127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++C+++H++
  Gorai.004G086700.2 161 PGERECQYYLRTGNCKFGSSCRYHHPR 187
                         5789*********************96 PP
3zf-CCCH34.82.7e-11208232226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +  +C f++++G+Ck+G++CkF H+
  Gorai.004G086700.2 208 GVQPCAFYLQNGHCKFGSTCKFDHP 232
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3144977IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-74976IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-65477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-55576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07160188IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6160187IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9162187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6163189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4166187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347206234IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6206233IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9208232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6208237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5210232IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELYGQNPAR NGSFSGHQLE WIPAGPETGG LEESMWQLSL RGTGSYPERP GVPDCVYYMR  60
TGFCGYGNRC RYNHPRNRAA VEAAVRATGE YPERPGEPAC QAPVSPALSP GAQPAVGATS  120
LYGLTQLSSS APSLAGPYSS LPSSTGPSSS NQKEQTFPER PGERECQYYL RTGNCKFGSS  180
CRYHHPRDKV VQQTNCILSP MGLPLRPGVQ PCAFYLQNGH CKFGSTCKFD HPIGTMRYSP  240
SASSLIDIPV APYPVGSLLA TLAPSSSSSE LLPEMISRSK KDSYLSRISS SASTASSSVG  300
LIFSQTGSVH FSDFQLSSQS LSSSRSTIQG AEVHSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016697368.11e-179PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X2
SwissprotQ84W911e-90C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2P8Y60.0A0A0D2P8Y6_GOSRA; Uncharacterized protein
STRINGGorai.004G086700.11e-140(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.21e-73C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]