PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G086700.1
Common NameB456_004G086700, LOC105790794
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 474aa    MW: 50720 Da    PI: 8.7508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G086700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-115076127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ + C +++rtG+C yG+rC+++H++
  Gorai.004G086700.1 50 PGVPDCVYYMRTGFCGYGNRCRYNHPR 76
                        57899********************96 PP
2zf-CCCH40.15.9e-1395121127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tGtCk+G++CkF+H++
  Gorai.004G086700.1  95 PGEPACQFYLKTGTCKFGASCKFHHPK 121
                         57899********************96 PP
3zf-CCCH37.73.5e-12142167227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +CkF+H++
  Gorai.004G086700.1 142 GEKECSYYLKTGQCKFGVTCKFHHPQ 167
                         7899********************97 PP
4zf-CCCH352.4e-11298324127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++C+++H++
  Gorai.004G086700.1 298 PGERECQYYLRTGNCKFGSSCRYHHPR 324
                         5789*********************96 PP
5zf-CCCH34.34.1e-11345369226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +  +C f++++G+Ck+G++CkF H+
  Gorai.004G086700.1 345 GVQPCAFYLQNGHCKFGSTCKFDHP 369
                         6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3144977IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-74976IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.01494122IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-794121IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1096121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-698121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4100121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84140168IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5140167IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6142168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4146166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07297325IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6297324IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4303324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347343371IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6343370IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9345369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6345374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MELYGQNPAR NGSFSGHQLE WIPAGPETGG LEESMWQLSL RGTGSYPERP GVPDCVYYMR  60
TGFCGYGNRC RYNHPRNRAA VEAAVRATGE YPERPGEPAC QFYLKTGTCK FGASCKFHHP  120
KHGGGSFGHV PLNIYGYPLR PGEKECSYYL KTGQCKFGVT CKFHHPQPAG TSMPASAPQF  180
YQPVQSPSVP LPEQYGGAPT SVRVARPPLL PGSYVQGAYG PVLFSPGVVP IPGWSHYSAP  240
VSPALSPGAQ PAVGATSLYG LTQLSSSAPS LAGPYSSLPS STGPSSSNQK EQTFPERPGE  300
RECQYYLRTG NCKFGSSCRY HHPRDKVVQQ TNCILSPMGL PLRPGVQPCA FYLQNGHCKF  360
GSTCKFDHPI GTMRYSPSAS SLIDIPVAPY PVGSLLATLA PSSSSSELLP EMISRSKKDS  420
YLSRISSSAS TASSSVGLIF SQTGSVHFSD FQLSSQSLSS SRSTIQGAEV HSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150416e-70AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474002.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
RefseqXP_012474003.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2MVK90.0A0A0D2MVK9_GOSRA; Uncharacterized protein
STRINGGorai.004G086700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]