PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G064100.2

Common Name

B456_004G064100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 228aa MW: 25490.5 Da PI: 4.3649

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G064100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.7	7.4e-15	3	35	13	47
HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +d+++qlG++ W++Ia++++ gRt++++k++w+++ Gorai.004G064100.2 3 IDLHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 35 89******.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	4.15E-10	1	36	No hit	No description
PROSITE profile	PS51294	23.041	1	40	IPR017930	Myb domain
SMART	SM00717	5.3E-6	1	38	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.12E-12	2	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-18	2	37	IPR009057	Homeodomain-like
Pfam	PF00249	3.8E-12	3	35	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MVIDLHAQLG NRWSKIASHL PGRTDNEIKN HWNTHIKKKL KKMGIDPLTH KALSSTTTEP 60 QQSQQKNQVS KGGLKSQVVD KSPKEPETSL QSTISEEKSM GSPLFDPMEM MMMMDNVDGF 120 CTDEVPLIEP HEILVPAAPS TSSSCDSSKL LEELQLPDFE WPSDCNTSSD DNNNKKMSLW 180 DDDDFNNTWG DLLSDRSELA LDDSLSSPLI QCPTGMPFDQ EYSWAYI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618995	1e-161	JX618995.1 Gossypium hirsutum clone NBRI_GE64682 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473663.1	1e-165	PREDICTED: protein ODORANT1-like
TrEMBL	A0A0D2QSS6	1e-165	A0A0D2QSS6_GOSRA; Uncharacterized protein
STRING	Gorai.004G064100.1	1e-164	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16600.1	3e-37	myb domain protein 43

Link Out ? help Back to Top
Phytozome	Gorai.004G064100.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]