PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G063200.1
Common NameB456_004G063200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 436aa    MW: 47166.3 Da    PI: 5.4091
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G063200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS360.62.3e-110814323374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lLl+cAe+v+ ++le a+ lL ++s+l+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l  ++ + ++s++ ++al+ ++ +sP++kf
  Gorai.004G063200.1  81 GLLLQCAECVAMDNLEDATDLLPEISQLSSPFGSSPERVGAYFAHALQARVVSSSLRTYSPLDNKSLTLTQSQKIFNALQSYNSISPLVKF 171
                         58*****************************************************************999********************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         sh+taNqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le tg+rLa+fA++lg+pfef++l  k
  Gorai.004G063200.1 172 SHFTANQAIFQALSGEDCVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLELTGKRLADFAASLGLPFEFHPLEGK 258
                         ********************************************************....99*************************9777 PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           +  +l++L v++ Ea++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l
  Gorai.004G063200.1 259 IGNVTDLNQLGVRSSEAVVVHWMH--HCLYDITGSDLA----TLRLLTVLKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGL 342
                         777779****************99..777766666666....9*********************.789*********************** PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         + +s er++vE++l+g ei+n+va  g +r+          e l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +
  Gorai.004G063200.1 343 SVDSLERHTVEQQLFGSEIRNIVAVGGPKRT---G------EELRRVGFQPVSLGGNPAAQASLLLGMFPWKGYTLLEENGCLKLGWKDLS 424
                         ****************************944...3......679*********************************************** PP

                GRAS 367 LvsvSaWr 374
                         L+++SaW+
  Gorai.004G063200.1 425 LLTASAWQ 432
                         *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.69953412IPR005202Transcription factor GRAS
PfamPF035147.9E-10881432IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLQSLVPQSP ISSNTTSSNP SSSMKSKRVE RDVSAATGED STADDPSNKR PNYSSGDKAA  60
AADEHDETVI EGESTGLRLL GLLLQCAECV AMDNLEDATD LLPEISQLSS PFGSSPERVG  120
AYFAHALQAR VVSSSLRTYS PLDNKSLTLT QSQKIFNALQ SYNSISPLVK FSHFTANQAI  180
FQALSGEDCV HVIDLDIMQG LQWPGLFHIL ASRSKKIRSM RITGFGSSSE LLELTGKRLA  240
DFAASLGLPF EFHPLEGKIG NVTDLNQLGV RSSEAVVVHW MHHCLYDITG SDLATLRLLT  300
VLKPKLITIV EQDLSHGGSF LGRFVEALHY YSALFDALGD GLSVDSLERH TVEQQLFGSE  360
IRNIVAVGGP KRTGEELRRV GFQPVSLGGN PAAQASLLLG MFPWKGYTLL EENGCLKLGW  420
KDLSLLTASA WQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1568543325380Protein SCARECROW
5b3h_A1e-1568543324379Protein SCARECROW
5b3h_D1e-1568543324379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.1370.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487940960.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4471723e-47AM447172.2 Vitis vinifera contig VV78X057306.3, whole genome shotgun sequence.
GenBankFQ3933793e-47FQ393379.1 Vitis vinifera clone SS0AFA26YE15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473649.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0D2RUD00.0A0A0D2RUD0_GOSRA; Uncharacterized protein
STRINGGorai.004G063200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]