PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G053200.2
Common NameB456_004G053200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 275aa    MW: 30116 Da    PI: 8.7847
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G053200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-105275427
                        ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                          C +++rtG+C yG++C+++H++
  Gorai.004G053200.2 52 TDCVYYMRTGFCGYGNSCRYNHPR 75
                        68********************96 PP

2zf-CCCH42.11.5e-1394120127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+++tGtCk+G++CkF+H++
  Gorai.004G053200.2  94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120
                         5789*********************96 PP

3zf-CCCH37.63.7e-12141166227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +CkF+H++
  Gorai.004G053200.2 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
                         7899********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1694876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-75076IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-85275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-893120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.61593121IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-1195120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-698119IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4145165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESRWQLSVR GVESYPERLG VTDCVYYMRT  60
GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK  120
DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY  180
QPVQSPSVPV PEQYGGASTN VRVARPPPLP GSYVQGGAYG PVLFSPGVVP IPGWSHYLAP  240
VLIPHCPLLL AFQAVTRRNI HFQRDLVNLN ANTI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050814.11e-149PREDICTED: zinc finger CCCH domain-containing protein 32
RefseqXP_021280725.11e-149zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-114C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2QZJ30.0A0A0D2QZJ3_GOSRA; Uncharacterized protein
STRINGGorai.004G053200.11e-166(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-106C3H family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]