PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G053200.2

Common Name

B456_004G053200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 275aa MW: 30116 Da PI: 8.7847

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G053200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	52	75	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C +++rtG+C yG++C+++H++ Gorai.004G053200.2 52 TDCVYYMRTGFCGYGNSCRYNHPR 75 68********************96 PP
2	zf-CCCH	42.1	1.5e-13	94	120	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ Gorai.004G053200.2 94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120 5789*********************96 PP
3	zf-CCCH	37.6	3.7e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Gorai.004G053200.2 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.8E-6	48	75	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.169	48	76	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.11E-7	50	76	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.3E-8	52	75	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.2E-5	54	75	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.9E-8	93	120	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.615	93	121	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.0E-11	95	120	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.2E-6	97	121	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.6E-6	98	119	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-5	139	166	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.821	139	167	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-9	141	166	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-6	141	167	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-4	145	165	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESRWQLSVR GVESYPERLG VTDCVYYMRT 60 GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK 120 DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY 180 QPVQSPSVPV PEQYGGASTN VRVARPPPLP GSYVQGGAYG PVLFSPGVVP IPGWSHYLAP 240 VLIPHCPLLL AFQAVTRRNI HFQRDLVNLN ANTI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007050814.1	1e-149	PREDICTED: zinc finger CCCH domain-containing protein 32
Refseq	XP_021280725.1	1e-149	zinc finger CCCH domain-containing protein 32
Swissprot	Q84W91	1e-114	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A0D2QZJ3	0.0	A0A0D2QZJ3_GOSRA; Uncharacterized protein
STRING	Gorai.004G053200.1	1e-166	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-106	C3H family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G053200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]