PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G053200.1 | ||||||||
Common Name | B456_004G053200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 378aa MW: 40934 Da PI: 8.5923 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.3 | 1.6e-10 | 52 | 75 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C +++rtG+C yG++C+++H++ Gorai.004G053200.1 52 TDCVYYMRTGFCGYGNSCRYNHPR 75 68********************96 PP | |||||||
2 | zf-CCCH | 41.5 | 2.2e-13 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ Gorai.004G053200.1 94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120 5789*********************96 PP | |||||||
3 | zf-CCCH | 37 | 5.6e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Gorai.004G053200.1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 36.9 | 6.2e-12 | 298 | 324 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ Gorai.004G053200.1 298 PGEPECQYYLRTGDCKFGSSCRYHHPR 324 5799*********************96 PP | |||||||
5 | zf-CCCH | 34.9 | 2.6e-11 | 345 | 369 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ Gorai.004G053200.1 345 GVQPCAFYLQNGHCKFGSTCKFDHP 369 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.8E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.169 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-6 | 50 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-7 | 52 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.615 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-8 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-11 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 97 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-6 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-6 | 297 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 297 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 299 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-6 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 303 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.084 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-6 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-9 | 345 | 369 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 345 | 374 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 347 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESRWQLSVR GVESYPERLG VTDCVYYMRT 60 GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK 120 DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY 180 QPVQSPSVPV PEQYGGASTN VRVARPPPLP GSYVQGGAYG PVLFSPGVVP IPGWSHYLAP 240 VSPVLSPGAQ PAVGATSLYG LTHLSSSTPS LAGPYSSLPS STGLSSSNQK EHTFPERPGE 300 PECQYYLRTG DCKFGSSCRY HHPRDRVVPQ TNCVLSPMGL PLRPGVQPCA FYLQNGHCKF 360 GSTCKFDHPV GTMRFSP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021280725.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0D2RTX5 | 0.0 | A0A0D2RTX5_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5RYS5 | 0.0 | A0A2P5RYS5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G053200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5912 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-179 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G053200.1 |
Publications ? help Back to Top | |||
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