PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G051600.1 | ||||||||
Common Name | B456_004G051600, LOC105790434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 33451.1 Da PI: 5.7861 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.2e-19 | 76 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Gorai.004G051600.1 76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-22 | 75 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 75 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 75 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-12 | 76 | 87 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-12 | 76 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-33 | 76 | 133 | No hit | No description |
PRINTS | PR00367 | 7.5E-12 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MCGGAIISEF IIRKGGHGVT ASDIWPNSPF VKNGFSSDST QSFHDDSLAL CKRHRPQSSD 60 GVQVEKKVKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR 120 KIRGKKAKVN FPNEDDAFST QYNPQINNST TAWNFTHPSN PPIYQQPQVN NGFRYGWNDL 180 GGFATDPIVV SEEDSSGSGD QKTNVCYLPV KPEEQQEGEA VNKSAIFEVQ EEENQVQKLS 240 EELIAYENYM KFYQIPYLDG QSPMTQNAVA QQESVFGELW NFLDDGVAVP PTSMPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 76 | 132 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 71 | KVKRQR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012473480.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071 | ||||
TrEMBL | A0A0D2R689 | 0.0 | A0A0D2R689_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5PYQ6 | 0.0 | A0A2P5PYQ6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G051600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-28 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G051600.1 |
Entrez Gene | 105790434 |
Publications ? help Back to Top | |||
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