PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G047200.1 | ||||||||
Common Name | B456_004G047200, LOC105790387 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | SBP | ||||||||
Protein Properties | Length: 983aa MW: 108789 Da PI: 6.2389 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.6 | 1.1e-40 | 152 | 229 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+++ Gorai.004G047200.1 152 VCQVDDCRADLSDAKDYHRRHKVCEMHSKASKTLVGNVMQRFCQQCSRFHVLQEFDDGKRSCRRRLAGHNKRRRKRNP 229 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.3E-33 | 146 | 214 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.017 | 150 | 227 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.22E-37 | 151 | 232 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.2E-29 | 153 | 226 | IPR004333 | Transcription factor, SBP-box |
CDD | cd00204 | 2.75E-7 | 750 | 864 | No hit | No description |
SuperFamily | SSF48403 | 1.61E-6 | 750 | 863 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.8E-5 | 750 | 864 | IPR020683 | Ankyrin repeat-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 983 aa Download sequence Send to blast |
MEARYGSEAQ LHGVSPEDLQ AVGKRTLEWN LNDWKWDGDL FVASRMNPVS ADGMGRQFFP 60 LGSGIPGNSS NSSSSCSDEV DLETERKREL EKRRRVTVVK DDSLNEEAGS LTLKLGGQDG 120 HGNPLSQRDT INWEGTSGKK TKLSGGSGNR AVCQVDDCRA DLSDAKDYHR RHKVCEMHSK 180 ASKTLVGNVM QRFCQQCSRF HVLQEFDDGK RSCRRRLAGH NKRRRKRNPE AVVNGNSLND 240 EQTSGYLLLS LLKILSNLHS NTSGQTTDQD VLSHLLRSLA NHTSEQGGRN ISGLLPVPQD 300 IEAVSALFSN GQGPPQLFKQ HITGPALEMP QKGVCSHDTR GAEVQGSATG VVKMNDFDLN 360 DIYIDSDNST DDIERSPAPV NIGTSSLDCP SWVQQTSHHS SPPQTSRNSD SASGQSPSSS 420 SGGAQSRTDR IVFKLFGKEP NDFPLVLRAQ ILDWLSHSPT DIESYIRPGC IVLTVYLRQA 480 EAAWDDLCSN LSFSLSRLLD CSDDTFWRTG WICIRVQDQI AFIYNGQVLV DTYLPLGSIR 540 YGKIVNVKPI AVSATERAQF SVKGINLSRP ATRLLCSVEG KYLVQNDSHE LIDDNNDFKE 600 QDELQCINFS CSIPTVTGRG FIEIEDPCFS SSFFPFIVAE DDVCSEIRML ESLLEITDTD 660 ADVGRMEAKN VAMDFIHEVG WLLHRSQLKS RLGQLDPSSE SFSLRRFKWL MEFSMDHEWC 720 AVVKKLLNIL LDGTVGSGEH HSIYLALTEM SLLHRAVRKN CRPLVELLLR FIPENASDKL 780 GFENGTVAAG VDKTSLFRPD VLGPGGLTPL HIAAGKDGSE DVLDALTDDP GKVGIDAWNS 840 AQDSTGSTPE DYARLRGHYS YIHLVQRKIN KRSLSGHVVV DIPATPSVSS PNQKQNNETT 900 TSFEISQLEL RPVKRHCKLC DQKLPYIYGM ATNMSLSYRP AMLSMVAIAA VCVCVALLFK 960 SCPEVVYVFR PFRWELLDYG AS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-32 | 144 | 226 | 3 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 95 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1201 | 0.0 | flower| flowering |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 48880327 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269|PubMed:10524240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622324 | 0.0 | KJ622324.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012473417.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 1 | ||||
Swissprot | Q9S7P5 | 0.0 | SPL12_ARATH; Squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A0A0D2QRW7 | 0.0 | A0A0D2QRW7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G047200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3030 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G047200.1 |
Entrez Gene | 105790387 |
Publications ? help Back to Top | |||
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