PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G038300.1

Common Name

B456_004G038300, LOC105790304

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 216aa MW: 24587.3 Da PI: 6.5123

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G038300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +ps+++++e+A++l +++e++V++WFqNrRa+ k+ Gorai.004G038300.1 91 RQRWTPTALQLQILENIYEQgTGTPSKQKIKEIASELaqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	101.3	6.7e-33	90	152	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPt+ Q++iLe++y++G+ tP+k++i++i++eL+++G+i+++NV++WFQNr+aR+++k Gorai.004G038300.1 90 ARQRWTPTALQLQILENIYEQGTGTPSKQKIKEIASELAQHGQISETNVYNWFQNRRARSKRK 152 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-17	87	159	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.754	87	152	IPR001356	Homeobox domain
SMART	SM00389	1.1E-13	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.67E-18	90	154	IPR009057	Homeodomain-like
CDD	cd00086	2.11E-13	91	152	No hit	No description
Pfam	PF00046	4.4E-19	91	151	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MDWENQEMQH HHQQGEDYLQ YQIQNGVCGK VMTDEQVEEL RKQIVAYSAI SEQLAELHKS 60 MSAHHNFTGI RLGNLYCDPI SASVGHKITA RQRWTPTALQ LQILENIYEQ GTGTPSKQKI 120 KEIASELAQH GQISETNVYN WFQNRRARSK RKLQSSTDSV NAETDMSTKE KRTKPVDPDF 180 ITNISQGVES FYFQASISRG YDSYNNLAEQ FGLLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589236	1e-72	JX589236.1 Gossypium hirsutum clone NBRI_GE23895 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473284.1	1e-162	PREDICTED: WUSCHEL-related homeobox 13-like
Refseq	XP_012473285.1	1e-162	PREDICTED: WUSCHEL-related homeobox 13-like
Refseq	XP_012473286.1	1e-162	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	Q5QMM3	4e-62	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0D2QRA6	1e-161	A0A0D2QRA6_GOSRA; Uncharacterized protein
STRING	Gorai.004G038300.1	1e-162	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17223	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-62	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Gorai.004G038300.1
Entrez Gene	105790304

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]