PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G036900.1
Common NameB456_004G036900, LOC105790287
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 365aa    MW: 40355.7 Da    PI: 7.5218
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G036900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-083656526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        +C ++++ G+C+yG++C++ H+
  Gorai.004G036900.1 36 ICTYYQK-GICSYGSQCRYEHV 56
                        7******.***********997 PP
2zf-CCCH19.71.5e-06146167426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         ++C+ fa+ G C++Gd+C+ +Hg
  Gorai.004G036900.1 146 PICS-FAAAGNCPRGDNCPHIHG 167
                         5788.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.9E-5230IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6333158IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-43257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-53455IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-63656IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-43655IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.727142169IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4148167IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.88E-13199275No hitNo description
Gene3DG3DSA:3.30.40.106.7E-10205270IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.67E-4210270No hitNo description
PROSITE profilePS5008912.238211269IPR001841Zinc finger, RING-type
SMARTSM001842.8E-7211268IPR001841Zinc finger, RING-type
PfamPF000973.5E-7211268IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180235244IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.37298326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929298327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPKTKGVLCK FFAHGACFKG ENCEFSHDWK DPPNNICTYY QKGICSYGSQ CRYEHVKASQ  60
TDLSASSSST KPRQFGVSGS APLGPSTSTY CGSVVLPATS GEFPGSNGGF LPPSTNQAWH  120
LESGQQDLLD DGDVLQPRSA NLVELPICSF AAAGNCPRGD NCPHIHGDLC PTCGKHCLHP  180
FRAEEREEHV KMCEKKQKHL EALKYSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC  240
ISCIRNWRSS SPSSGMDVNT ALRACPICRK LSYFVIPSVI WYSTPEEKQE IIDSYKAKLR  300
SIDCKHFNFG NGNCPFGTSC FYKHAYRDGR LEEVALRHLG AEDGHTVIAK NIRLLDFLSD  360
LHIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.8470.0flower|seedling| flowering
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473254.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X2
SwissprotE0X9N41e-176C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0D2MT670.0A0A0D2MT67_GOSRA; Uncharacterized protein
STRINGGorai.004G036900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-162C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]