PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G035800.2 | ||||||||
Common Name | B456_004G035800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 37117.3 Da PI: 7.7416 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 279 | 324 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l P+ +k + a++L +AveYIk+Lq Gorai.004G035800.2 279 SIAERMRRTRISERMRKLQGLFPNI----DKQTNTADMLDMAVEYIKDLQ 324 689*********************5....588*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.018 | 273 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-14 | 276 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.25E-10 | 277 | 328 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.2E-13 | 278 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 279 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-10 | 279 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
METADYYYLQ QNQQQSCGLM RYRSMPAENR VGYDEYGSDF RSSSSSEMET LFMLCGNGSS 60 GNVSEYEEKS VKQEEEMMYQ IQSLPLENVE SSFGVGTNLG LENSMQRNGN GSNLVRQTSS 120 PSQVFSSHGL DNGFNATRKM TTLRACNGIN GEPTSTGRLY NHISFSSGPM PQIAQVENGG 180 LASNGNGRNG MNFIPNLMSD SRNNASLSGL KRARERDSDL LSGLSRLQTR NQDCRDCSTA 240 LTHQLSLPTT YEEVDVWQFQ SSVPCKIRAK RGCATHPRSI AERMRRTRIS ERMRKLQGLF 300 PNIDKQTNTA DMLDMAVEYI KDLQKQVKIN Y* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX579285 | 1e-131 | JX579285.1 Gossypium hirsutum clone NBRI_GE11491 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012473239.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
TrEMBL | A0A0D2QYL9 | 0.0 | A0A0D2QYL9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G035800.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-32 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G035800.2 |
Publications ? help Back to Top | |||
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