PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G032500.1
Common NameB456_004G032500, LOC105790241
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 25090.8 Da    PI: 8.835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G032500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-192978255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp +   ++r++lg+f++aeeAa+a++aa+  l+g
  Gorai.004G032500.1 29 RYRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDSAEEAARAYDAAAITLRG 78
                        69*******.**********743...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-182886No hitNo description
PROSITE profilePS5103224.1312986IPR001471AP2/ERF domain
SMARTSM003806.1E-382992IPR001471AP2/ERF domain
PfamPF008477.3E-142978IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-232987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-322986IPR001471AP2/ERF domain
PRINTSPR003674.7E-113041IPR001471AP2/ERF domain
PRINTSPR003674.7E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRKGRGAAAA ADTAMKPAVE ANGSVKEQRY RGVRKRPWGR FAAEIRDPLK KTRVWLGTFD  60
SAEEAARAYD AAAITLRGNK AKTNFPFNSS DFPAFGIDRH HRRNNEGFIA DGHRLHQTGG  120
DYEDPEVNPQ RPARSSMSST VESFSGPRPT QPPRKPSDFE AVSTRKYHPK MPRTAPEDCR  180
SDCDSSSSVF DNGDDDNVSS SRRKFLPFDL NFPPLDEVDD LTLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2129861472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1164470.0DQ116447.1 Gossypium hirsutum ethylene-responsive element-binding factor (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473192.11e-166PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803395e-47ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0D2RSP71e-164A0A0D2RSP7_GOSRA; Uncharacterized protein
STRINGGorai.004G032500.11e-165(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-38ethylene response factor 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]