PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G023900.1

Common Name

B456_004G023900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 121aa MW: 12897.9 Da PI: 9.0761

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G023900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67.4	3.3e-21	43	103	1	61
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamssl 61 +C aCk+lrr+Ca++Cvlapyfp ++p+kfa++h++FGasn++k+l+ +++ e+ ++s+ Gorai.004G023900.1 43 PCVACKILRRRCADKCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQVPSTSPAENQLTSV 103 7*********************************************987666666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.425	42	120	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-20	43	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MEYSEPIPTP TISSSPSLSP NSLISSNSPP SPPLSPPLVV ISPCVACKIL RRRCADKCVL 60 APYFPPTEPA KFAIAHRVFG ASNIIKFLQV PSTSPAENQL TSVVKKKPHC TDSLNQTTQQ 120 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-16	42	88	10	56	LOB family transfactor Ramosa2.1
5ly0_B	1e-16	42	88	10	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616907	2e-45	JX616907.1 Gossypium hirsutum clone NBRI_GE61864 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012462233.1	3e-35	PREDICTED: LOB domain-containing protein 1-like
TrEMBL	A0A0D2MSI3	1e-78	A0A0D2MSI3_GOSRA; Uncharacterized protein
STRING	Gorai.004G023900.1	2e-79	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20654	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-28	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Gorai.004G023900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]