PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.004G014700.5 | ||||||||
Common Name | B456_004G014700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 439aa MW: 49552.3 Da PI: 9.9606 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 42.8 | 9.1e-14 | 2 | 45 | 14 | 57 |
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk Gorai.004G014700.5 2 ALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 45 7*****************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.171 | 1 | 46 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0017 | 1 | 50 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-13 | 2 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.71E-11 | 2 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.9E-11 | 2 | 45 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.17E-10 | 2 | 46 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 21 | 44 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 439 aa Download sequence Send to blast |
MALEKFYKEL RFPSDEMKAQ IALQVGLTEK QISSWFCHRR LKDKKRDEYV NGRLDHSSGI 60 IQDRGSGLRQ DSSGSIKERD YRNIDPREVE SGLISSQEFL ATDHVYDRRN HQNPYDACME 120 DTSSESSSSL QDMHFSENRG PYDTKLGQNG TITQINPRTT KNTVYKPSGY LKVKGESENP 180 AILAVKRQLG RYYIEDGPLL ATDFDLLPNG AFEFPSSKAV SEPVDVGDHP QQPRSPRISG 240 AMKQPNLNVV NEVNNSKTSS QDPYMENATF KTMYGLERRN KKSRHQLYKS HFNSFRGQNS 300 SSNIHRSSAE NAGTIDCKRS KASSKLAVER MRPDSFTNHP GPNVGKLDNE QEKTCLHDND 360 NRTYKAPKNK IPSKTSNSKR GCIESPGARM AKVEKLGGQR KPKKEYPVGV KTDPTNESRV 420 RLPSKSMSIS RDRDPLRQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 38 | 46 | RRLKDKKRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472928.1 | 0.0 | PREDICTED: uncharacterized protein LOC105790068 isoform X3 | ||||
TrEMBL | A0A0D2QXE8 | 0.0 | A0A0D2QXE8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G014700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 9e-54 | HB-other family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.004G014700.5 |
Publications ? help Back to Top | |||
---|---|---|---|
|