PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G014700.5
Common NameB456_004G014700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 439aa    MW: 49552.3 Da    PI: 9.9606
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G014700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.89.1e-142451457
                        HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                        +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk
  Gorai.004G014700.5  2 ALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 45
                        7*****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.171146IPR001356Homeobox domain
SMARTSM003890.0017150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-13246IPR009057Homeodomain-like
SuperFamilySSF466894.71E-11247IPR009057Homeodomain-like
PfamPF000461.9E-11245IPR001356Homeobox domain
CDDcd000862.17E-10246No hitNo description
PROSITE patternPS0002702144IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MALEKFYKEL RFPSDEMKAQ IALQVGLTEK QISSWFCHRR LKDKKRDEYV NGRLDHSSGI  60
IQDRGSGLRQ DSSGSIKERD YRNIDPREVE SGLISSQEFL ATDHVYDRRN HQNPYDACME  120
DTSSESSSSL QDMHFSENRG PYDTKLGQNG TITQINPRTT KNTVYKPSGY LKVKGESENP  180
AILAVKRQLG RYYIEDGPLL ATDFDLLPNG AFEFPSSKAV SEPVDVGDHP QQPRSPRISG  240
AMKQPNLNVV NEVNNSKTSS QDPYMENATF KTMYGLERRN KKSRHQLYKS HFNSFRGQNS  300
SSNIHRSSAE NAGTIDCKRS KASSKLAVER MRPDSFTNHP GPNVGKLDNE QEKTCLHDND  360
NRTYKAPKNK IPSKTSNSKR GCIESPGARM AKVEKLGGQR KPKKEYPVGV KTDPTNESRV  420
RLPSKSMSIS RDRDPLRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13846RRLKDKKRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472928.10.0PREDICTED: uncharacterized protein LOC105790068 isoform X3
TrEMBLA0A0D2QXE80.0A0A0D2QXE8_GOSRA; Uncharacterized protein
STRINGGorai.004G014700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.19e-54HB-other family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]