PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G014700.3 | ||||||||
Common Name | B456_004G014700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 467aa MW: 52722.8 Da PI: 9.8811 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 18 | 73 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+ +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk Gorai.004G014700.3 18 KKRTVKTPAQVMALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 73 8*****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-18 | 4 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.856 | 14 | 74 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-16 | 15 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.9E-14 | 16 | 78 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.9E-16 | 18 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.63E-15 | 18 | 74 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MEGEEQTEEN KVSLDVNKKR TVKTPAQVMA LEKFYKELRF PSDEMKAQIA LQVGLTEKQI 60 SSWFCHRRLK DKKRDEYVNG RLDHSSGIIQ DRGSGLRQDS SGSIKERDYR NIDPREVESG 120 LISSQEFLAT DHVYDRRNHQ NPYDACMEDT SSESSSSLQD MHFSENRGPY DTKLGQNGTI 180 TQINPRTTKN TVYKPSGYLK VKGESENPAI LAVKRQLGRY YIEDGPLLAT DFDLLPNGAF 240 EFPSSKAVSE PVDVGDHPQQ PRSPRISGAM KQPNLNVVNE VNNSKTSSQD PYMENATFKT 300 MYGLERRNKK SRHQLYKSHF NSFRGQNSSS NIHRSSAENA GTIDCKRSKA SSKLAVERMR 360 PDSFTNHPGP NVGKLDNEQE KTCLHDNDNR TYKAPKNKIP SKTSNSKRGC IESPGARMAK 420 VEKLGGQRKP KKEYPVGVKT DPTNESRVRL PSKSMSISRD RDPLRQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 74 | RRLKDKKRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472928.1 | 0.0 | PREDICTED: uncharacterized protein LOC105790068 isoform X3 | ||||
TrEMBL | A0A0D2QXE8 | 0.0 | A0A0D2QXE8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G014700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-61 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G014700.3 |
Publications ? help Back to Top | |||
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