PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G014700.1

Common Name

B456_004G014700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 509aa MW: 57004.4 Da PI: 9.6731

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G014700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.6e-18	32	87	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+ +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk Gorai.004G014700.1 32 KKRTVKTPAQVMALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 87 8*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-18	18	88	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-16	25	88	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.856	28	88	IPR001356	Homeobox domain
SMART	SM00389	2.9E-14	30	92	IPR001356	Homeobox domain
Pfam	PF00046	8.9E-16	32	87	IPR001356	Homeobox domain
CDD	cd00086	1.62E-15	32	88	No hit	No description
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MVNRREPAEG VPSIVTGEEQ TEENKVSLDV NKKRTVKTPA QVMALEKFYK ELRFPSDEMK 60 AQIALQVGLT EKQISSWFCH RRLKDKKRDE YVNGRLDHSS GIIQDRGSGL RQDSSGSIKE 120 RDYRNIDPRE VESGLISSQE FLATDHVYDR RNHQNPYDAC MEDTSSESSS SLQDMHFSEN 180 RGPYDTKLGQ NGTITQINPR TTKNTVYKPS GYLKVKGESE NPAILAVKRQ LGRYYIEDGP 240 LLATDFDLLP NGAFEFPSSK AVSEPVDVGD HPQQPRSPRI SGAMKQPNLN VVNEVNNSKT 300 SSQDPYMENA TFKTMYGLER RNKKSRHQLY KSHFNSFRGQ NSSSNIHRSS AENAGTIDCK 360 RSKASSKLAV ERMRPDSFTN HPGPNVGKLD NEQEKTCLHD NDNRTYKAPK NKIPSKTSNS 420 KRGCIESPGA RMAKVEKLGG QRKPKKEYPV GVKTDPTNES RVAKQVNVDF PRPRSPPSMN 480 PTKSYRASMD VPSSFSEDEV ADTSSSSG*

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MVNRREPAEG VPSIVTGEEQ TEENKVSLDV NKKRTVKTPA QVMALEKFYK ELRFPSDEMK  60
AQIALQVGLT EKQISSWFCH RRLKDKKRDE YVNGRLDHSS GIIQDRGSGL RQDSSGSIKE  120
RDYRNIDPRE VESGLISSQE FLATDHVYDR RNHQNPYDAC MEDTSSESSS SLQDMHFSEN  180
RGPYDTKLGQ NGTITQINPR TTKNTVYKPS GYLKVKGESE NPAILAVKRQ LGRYYIEDGP  240
LLATDFDLLP NGAFEFPSSK AVSEPVDVGD HPQQPRSPRI SGAMKQPNLN VVNEVNNSKT  300
SSQDPYMENA TFKTMYGLER RNKKSRHQLY KSHFNSFRGQ NSSSNIHRSS AENAGTIDCK  360
RSKASSKLAV ERMRPDSFTN HPGPNVGKLD NEQEKTCLHD NDNRTYKAPK NKIPSKTSNS  420
KRGCIESPGA RMAKVEKLGG QRKPKKEYPV GVKTDPTNES RVAKQVNVDF PRPRSPPSMN  480
PTKSYRASMD VPSSFSEDEV ADTSSSSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	88	RRLKDKKRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472923.1	0.0	PREDICTED: uncharacterized protein LOC105790068 isoform X1
Refseq	XP_012472924.1	0.0	PREDICTED: uncharacterized protein LOC105790068 isoform X1
Refseq	XP_012472925.1	0.0	PREDICTED: uncharacterized protein LOC105790068 isoform X1
Refseq	XP_012472926.1	0.0	PREDICTED: uncharacterized protein LOC105790068 isoform X1
TrEMBL	A0A0D2P539	0.0	A0A0D2P539_GOSRA; Uncharacterized protein
STRING	Gorai.004G014700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM28239	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-63	HB-other family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G014700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]