PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G012800.1 | ||||||||
Common Name | B456_004G012800, LOC105790049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22006.1 Da PI: 5.2145 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.5 | 4.7e-43 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+lapyfp ++p+kf n+h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+ Gorai.004G012800.1 37 PCAACKILRRRCADKCMLAPYFPPTEPAKFTNAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQ 127 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la++++e Gorai.004G012800.1 128 AQLAKAQAE 136 ****99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.209 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-43 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MFKMECREAT PSAVASPNSS NPSSPSTPTS PPVVISPCAA CKILRRRCAD KCMLAPYFPP 60 TEPAKFTNAH RVFGASNIIK FLQELPESQR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ 120 KQVNELQAQL AKAQAEVVNM QLQQANLVGA LLCMEATAPP PQPHPQQLAV DTFMCSPQSY 180 HSNPGFIDDD DDNNNLGSLW EPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-43 | 23 | 139 | 1 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-43 | 23 | 139 | 1 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472898.1 | 1e-149 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 2e-73 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A0D2MRZ9 | 1e-148 | A0A0D2MRZ9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G012800.1 | 1e-149 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-61 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G012800.1 |
Entrez Gene | 105790049 |
Publications ? help Back to Top | |||
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