PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G012700.1

Common Name

B456_004G012700, LOC105790048

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 273aa MW: 30720 Da PI: 7.3353

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G012700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.2	2.3e-40	37	98	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++sss Gorai.004G012700.1 37 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSS 98 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.2E-34	39	95	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	40	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDPSSRQYQE MPNPTLGNMM VCNKGNEQQE RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS 60 LSQPRYFCKS CRRYWTKGGT LRNVPVGGGC RKNRRSSSSS SSSSSKRSQD QLLMPSNTNL 120 PPIDTSELSL AIARLQKQAN VHLGFDENEL PVLGNPNSFG LLGNQNHFQG FYNYGFENSG 180 GETMMLPYNN DEEIISDAMI RTASNGMVAA MKQEVVSDGN KSDENQNQWG LQWQFNGDHG 240 NNYYNMVDFD SVRENWSGLS STWHGLLNSP LM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393984	1e-135	GQ393984.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0949 SSR marker CGR6147 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472897.1	0.0	PREDICTED: dof zinc finger protein DOF2.1
TrEMBL	A0A0D2QXB3	0.0	A0A0D2QXB3_GOSRA; Uncharacterized protein
STRING	Gorai.004G012700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	2e-45	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G012700.1
Entrez Gene	105790048

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]