PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G004800.2

Common Name

B456_004G004800, LOC105789974

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 319aa MW: 34034.7 Da PI: 9.8689

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G004800.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.7e-39	70	130	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Gorai.004G004800.2 70 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 130 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-35	54	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-33	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MVFSSVPIYL DPPNWQQHNH HQHGGVGTGS TENPQLPPLP PPSHVGVGGA GSIRPGSMAG 60 RARLAKIPQP EAALKCPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRNVPVG 120 GGCRRNKKNK SSSSKSTGSA EKQGGSNSTN AVNNNIPSEI TGHLPQQTPH LPFMASLQSF 180 SQFGMGNIGL NFGGSANGGQ AEMGFHIGTN SGMNSPILSS AGHQQFPFFE PTNGLYSLQS 240 EGTEGSSSMV GESQLLRSIT SSSRVSQLAP VKMENNNNQG LNLSRSMMNN ASENNQYWGG 300 NNWTDLSGLN ASNTNHLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472792.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X2
TrEMBL	A0A0D2MRN9	0.0	A0A0D2MRN9_GOSRA; Uncharacterized protein
STRING	Gorai.004G004800.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	3e-53	Dof family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G004800.2
Entrez Gene	105789974

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]