PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G004800.1 | ||||||||
Common Name | B456_004G004800, LOC105789974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 320aa MW: 34162.9 Da PI: 9.8689 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.4 | 3.7e-39 | 71 | 131 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Gorai.004G004800.1 71 PEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 131 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-35 | 55 | 126 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.1E-33 | 74 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 75 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 77 | 113 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MVFSSVPIYL DPPNWQQQHN HHQHGGVGTG STENPQLPPL PPPSHVGVGG AGSIRPGSMA 60 GRARLAKIPQ PEAALKCPRC ESTNTKFCYF NNYSLSQPRH FCKTCRRYWT RGGALRNVPV 120 GGGCRRNKKN KSSSSKSTGS AEKQGGSNST NAVNNNIPSE ITGHLPQQTP HLPFMASLQS 180 FSQFGMGNIG LNFGGSANGG QAEMGFHIGT NSGMNSPILS SAGHQQFPFF EPTNGLYSLQ 240 SEGTEGSSSM VGESQLLRSI TSSSRVSQLA PVKMENNNNQ GLNLSRSMMN NASENNQYWG 300 GNNWTDLSGL NASNTNHLL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472791.1 | 0.0 | PREDICTED: dof zinc finger protein DOF2.2-like isoform X1 | ||||
TrEMBL | A0A0D2P4Q3 | 0.0 | A0A0D2P4Q3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G004800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.1 | 4e-52 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G004800.1 |
Entrez Gene | 105789974 |
Publications ? help Back to Top | |||
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