PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G002100.4
Common NameB456_004G002100
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 264aa    MW: 29460.3 Da    PI: 7.9703
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G002100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17147196155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.004G002100.4 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-16147206IPR016177DNA-binding domain
PfamPF008472.3E-9147196IPR001471AP2/ERF domain
PROSITE profilePS5103217.899148204IPR001471AP2/ERF domain
SMARTSM003808.4E-33148210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17148204IPR001471AP2/ERF domain
CDDcd000181.08E-11148206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLDLNLNVGS TESAQDSNSA APFSTERNGD CGNQMDESGT SNSSIVNDED ESFSTRANGD  60
AFTLSFDILK VGSGGNEFQN DDADVVVTRE LFPATRVGIS EGQSSGNNNK WIDHPFERKE  120
ADESRVIRQQ SSQTAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGVDAD INFSVSDYEE DMKQMKNLCK EEFVHILRRQ STGFSRGSSK  240
YRGVTLHKCG RWEARMGQFL GKK*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5265335e-60HQ526533.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GB2FT simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472747.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK032e-91RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0D2QWV20.0A0A0D2QWV2_GOSRA; Uncharacterized protein
STRINGGorai.004G002100.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.27e-94related to AP2.7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]