PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G183700.1
Common NameB456_003G183700, LOC105789918
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 302aa    MW: 33684.8 Da    PI: 5.4179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G183700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lvd++++ G g+W+ +++  g++R++k+c++rw +yl
  Gorai.003G183700.1 15 KGPWTAEEDQKLVDYINKNGHGSWRIVPKQAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP

2Myb_DNA-binding51.52.3e-1668111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg++ +eE+ l+++++  lG++ W++Ia++++ gRt++++k++w++
  Gorai.003G183700.1  68 RGKFGEEEERLIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNFWNT 111
                         89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24764IPR009057Homeodomain-like
PROSITE profilePS5129419.6771062IPR017930Myb domain
SuperFamilySSF466891.09E-3112109IPR009057Homeodomain-like
SMARTSM007175.0E-151464IPR001005SANT/Myb domain
PfamPF002494.9E-171562IPR001005SANT/Myb domain
CDDcd001678.16E-111762No hitNo description
PROSITE profilePS5129426.22263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2665117IPR009057Homeodomain-like
SMARTSM007171.9E-1567115IPR001005SANT/Myb domain
PfamPF002494.0E-1568111IPR001005SANT/Myb domain
CDDcd001674.64E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRSPSCADD ANVKKGPWTA EEDQKLVDYI NKNGHGSWRI VPKQAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FGEEEERLII NLHSVLGNKW SKIAAHLPGR TDNEIKNFWN TRIRRKLLNL  120
GIDPHTHKPR TDLDHLLNVS QLLCVAQLGN MMNPLDAAFK LQADAAQLAQ AQLFQNLMQI  180
MNTNEAANVE SDGFLALQEN TNPIPQSIPN NGFIAGVVPQ TSDQWGLSSS FEQRENPVLP  240
GLVSISPESN STMENKGNNE TDSTIYEAWE KLIMEDDEAD GGSYWKEMLD LASSTSSPIS  300
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31151177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472676.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP01e-79MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A0D2RPT20.0A0A0D2RPT2_GOSRA; Uncharacterized protein
STRINGGorai.003G183700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.18e-78myb domain protein 39
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]