PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.003G183700.1 | ||||||||
Common Name | B456_003G183700, LOC105789918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33684.8 Da PI: 5.4179 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.6 | 1.4e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++++ G g+W+ +++ g++R++k+c++rw +yl Gorai.003G183700.1 15 KGPWTAEEDQKLVDYINKNGHGSWRIVPKQAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ +eE+ l+++++ lG++ W++Ia++++ gRt++++k++w++ Gorai.003G183700.1 68 RGKFGEEEERLIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNFWNT 111 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.677 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.16E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.222 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.64E-11 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MGRSPSCADD ANVKKGPWTA EEDQKLVDYI NKNGHGSWRI VPKQAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FGEEEERLII NLHSVLGNKW SKIAAHLPGR TDNEIKNFWN TRIRRKLLNL 120 GIDPHTHKPR TDLDHLLNVS QLLCVAQLGN MMNPLDAAFK LQADAAQLAQ AQLFQNLMQI 180 MNTNEAANVE SDGFLALQEN TNPIPQSIPN NGFIAGVVPQ TSDQWGLSSS FEQRENPVLP 240 GLVSISPESN STMENKGNNE TDSTIYEAWE KLIMEDDEAD GGSYWKEMLD LASSTSSPIS 300 W* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-31 | 15 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472676.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q8GWP0 | 1e-79 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A0D2RPT2 | 0.0 | A0A0D2RPT2_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G183700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17785.1 | 8e-78 | myb domain protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.003G183700.1 |
Entrez Gene | 105789918 |
Publications ? help Back to Top | |||
---|---|---|---|
|