PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G177500.1
Common NameB456_003G177500, LOC105789304
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 530aa    MW: 58591 Da    PI: 6.8444
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G177500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.2e-16741135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Gorai.003G177500.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                        ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11544No hitNo description
CDDcd002021.55E-16655No hitNo description
PfamPF003206.9E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.7E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.438761IPR000679Zinc finger, GATA-type
PfamPF139193.2E-8273360IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLAKYTPLHA RAEPEDLRAS  60
RVKSISINKD REAKRKTNHD IAIVSPDYNL GFRKFMDEDT SNRSSSGSAI SNSESCAQFG  120
SADVSDLTGP SQSNVWDSMV PSKKRTCVNR PKPSPVEKLT KDLCTILHEQ KSSYFSVSSD  180
DDLLLESETP MVSVEIGHGG ILIKHPSSIA REEESEASSL SFENKQYSMN EAYSHSSSFP  240
AYNDSKGVKY LGHGIEKAKN PAGQGMQHEQ LKRDKAQHEK PLILESRNLP LCNIELSDII  300
NFEEFVKHLT KDEQQQLLQY LPPLDIAKLP ESLKSMFESP QFEDNLCYFQ QLLEEGVFNI  360
SVPGVNAEDC KTLKRLALIN LTRSHWVECH HGLKKCGSVG VSVITRGPNV VPLNNSATVK  420
RSRDGQIPEA RTLMSPKRVI MKATHENKEL IDNESSCFSP RSLFALPPDG SSPMLDSLHF  480
ANECSDQDLL LDVPSNGTFP QAELLHPTSS FGQQASTSSN SPHPHLVHP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472086.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-148GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0D2MQE90.0A0A0D2MQE9_GOSRA; Uncharacterized protein
STRINGGorai.003G177500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-135GATA transcription factor 26
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]