PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G176200.1 | ||||||||
Common Name | B456_003G176200, LOC105789291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 316aa MW: 35483.6 Da PI: 6.33 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.3e-18 | 171 | 221 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g r +lg+f ta eAaka+++ + kl+g Gorai.003G176200.1 171 HYRGVRQRP-WGKFAAEIRDPTRRG--SRMWLGTFETAIEAAKAYDRTAFKLRG 221 8********.**********97665..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.2E-31 | 170 | 230 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.66E-29 | 170 | 229 | No hit | No description |
SMART | SM00380 | 3.0E-35 | 171 | 235 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 171 | 230 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.1E-12 | 171 | 221 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.551 | 171 | 229 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-10 | 172 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-10 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MEASSEVISA LQYIKQYLLG EFSPVELGSV SSGNQWLPES KPRVSTPGSE SLLSSDSSLT 60 VSNFNCLDDD DDFFQFSTDF PGFQFESKPQ IIDLTTPKSL SLNAGAFEFE VKPQIAQIST 120 TKHKVSSNSS SQNRKRSLKI SLPHKMEQIQ FGKSDLAQAE PRVSNSEDKK HYRGVRQRPW 180 GKFAAEIRDP TRRGSRMWLG TFETAIEAAK AYDRTAFKLR GSKAILNFPL EAGTSDTSAD 240 DLERKRSRDD GEREERQVKA VKREKDDEVT KTRENGEVPL TPSNWKTFLD WDNDQKGFFN 300 VPLLSPLSFP QVVVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-29 | 170 | 230 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-29 | 170 | 236 | 4 | 70 | ATERF1 |
3gcc_A | 2e-29 | 170 | 236 | 4 | 70 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC410865 | 0.0 | KC410865.1 Gossypium hirsutum ethylene-responsive transcription factor (ERF9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472076.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
TrEMBL | A0A0D2MQC4 | 0.0 | A0A0D2MQC4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G176200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 6e-59 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G176200.1 |
Entrez Gene | 105789291 |
Publications ? help Back to Top | |||
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