PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G160500.1
Common NameB456_003G160500, LOC105789137
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 482aa    MW: 54216.4 Da    PI: 9.1347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G160500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-1756102148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd ll++avk+  g++Wk Ia+ ++ gRt+  c +rwqk+l
  Gorai.003G160500.1  56 KGGWTKEEDNLLIEAVKKCNGRNWKGIAEFLP-GRTDILCLHRWQKVL 102
                         688*****************************.************986 PP
2Myb_DNA-binding57.72.8e-18108154148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd+ + ++vk++G ++W+ Ia+ +g gR +kqc++rw+++l
  Gorai.003G160500.1 108 KGPWTKEEDDCITRLVKKFGCRRWSVIAKFVG-GRIGKQCRERWYNHL 154
                         79******************************.*************97 PP
3Myb_DNA-binding445e-14160202145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W +eE+ +l  +++ +G++ W++ a+ ++ gRt + +k++w+
  Gorai.003G160500.1 160 KDSWGEEEEAILTYYHQIYGNK-WSKLAELLP-GRTNNAIKNHWN 202
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.9E-1953116IPR009057Homeodomain-like
SMARTSM007172.3E-1355104IPR001005SANT/Myb domain
PROSITE profilePS5129414.36556102IPR017930Myb domain
PfamPF002491.6E-1456102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2258118IPR009057Homeodomain-like
CDDcd001672.19E-1259102No hitNo description
PROSITE profilePS5129427.59103158IPR017930Myb domain
SuperFamilySSF466892.17E-29105201IPR009057Homeodomain-like
SMARTSM007171.1E-16107156IPR001005SANT/Myb domain
PfamPF002491.9E-17108154IPR001005SANT/Myb domain
CDDcd001676.25E-15110154No hitNo description
Gene3DG3DSA:1.10.10.605.7E-25119161IPR009057Homeodomain-like
PROSITE profilePS5129416.375159209IPR017930Myb domain
SMARTSM007173.7E-13159207IPR001005SANT/Myb domain
PfamPF002494.0E-11160202IPR001005SANT/Myb domain
CDDcd001674.88E-9162205No hitNo description
Gene3DG3DSA:1.10.10.603.4E-20162209IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVEVKKEKEE YYYEDLIEED RSSASPSSFS SSSFDTITTS PSLQGRVTGP TLWSMKGGWT  60
KEEDNLLIEA VKKCNGRNWK GIAEFLPGRT DILCLHRWQK VLNPGISKGP WTKEEDDCIT  120
RLVKKFGCRR WSVIAKFVGG RIGKQCRERW YNHLDPTIRK DSWGEEEEAI LTYYHQIYGN  180
KWSKLAELLP GRTNNAIKNH WNCTLKKKLG LHSPRRYAKG IEKGSSDFHD RETMPKGMKV  240
KDFRQGLDET KFVNQNVTVD YSAETCNLDL VLGIAGPPEI KLGADPGNVG KYRSPGVSYD  300
QMPVHFNEKG TIDDSIVGSV TRYDKHTKVH EPQPALFRIV SQGGCALLAS TSVGSPSSSL  360
AFNPESKIRR TNTAYSSDCS LHNEPAQREG SISTVFPVVE NGDIRFKSSF CHASPPNKLI  420
GSLSPNSRSL ESILRISAMT FKNTPSIIRK RSYKKGWNDN ISEFAASYPV RTFSCFHMEE  480
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-62462096159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-62462096159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471838.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A0D2QUE30.0A0A0D2QUE3_GOSRA; Uncharacterized protein
STRINGGorai.003G160500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2070356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-72myb domain protein 3r-5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]