PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G152700.2 | ||||||||
Common Name | B456_003G152700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 866aa MW: 95398.5 Da PI: 6.9556 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.6 | 5.6e-19 | 333 | 432 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ l+++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++++ Gorai.003G152700.2 333 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGLPLRIQDVNGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLRAGDTVTFSRID- 421 99**************************555556677***************9989999999***9.********************887. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++lv+++++ Gorai.003G152700.2 422 PGGKLVMGFRK 432 77777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-30 | 330 | 435 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.84E-21 | 330 | 433 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.68E-24 | 331 | 432 | No hit | No description |
PROSITE profile | PS50863 | 11.152 | 333 | 434 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-23 | 333 | 433 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-16 | 333 | 432 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.275 | 561 | 611 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 2.1E-10 | 566 | 608 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MGSKICMNSS CGAATSNEWK KGWPLRSGGF AHLCYPCGSA YEDGVYCDTF HLEESGWREC 60 RICGNHLHCG CIASNYLLEL LDYGGVGCIS CAKSSRLHTV KRIQTHGDEI PEGVGAVPMN 120 NAGSSAVEGK AVSDHVDERT LAPLCKSMEA NECNLLPQSQ RGDANASLGQ HRGEEVICPT 180 EKVGAGFSNA TQPYVRPANF AKLDNARSAL DVRDIQDSLP QPYLSMSLGG SSANPNFLLP 240 FSSGLADGKE PSKTWSSFQQ GQQSRRILPK PSKNGLTTSS ELNKGMIPQA RITRPPVEGR 300 GKNHLLPRYW PRITDQELQK LSGDLKSTIV PLFEKVLSAS DAGRIGRLVL PKACAEAYFP 360 PISQSEGLPL RIQDVNGKEW TFQFRFWPNN NSRMYVLEGV TPCIQSMQLR AGDTVTFSRI 420 DPGGKLVMGF RKAANSDTQT PKGGKDLLGN ALSEHFGLPD GNISRSRDED HGVRANENSV 480 HQLAMNAEKK KTRNIGSKSK RLLMHSVDAL ELRLTWEEAQ DLLRPPPSVR PSIVTIEDHE 540 FEEYDEPPVF GKRTIFGAWP SGEQEQWAQC DDCSKWRRLP VDVLLPSKWK CSDNVWDSSR 600 CACSAPEETG PKELENILKV GTDLKKAKVQ ESPKVAPEPE PTGLDALASA AVLGDKMGDV 660 GESSVGATTK HPRHRPGCTC IVCIQPPSGK GKHKANCTCN VCLTVKRRFK TLMLRKKKRQ 720 SEREAEISER DNKKQMDETE LKDTRNDHSE NEGSRSRIEG EVAEASTGEI DLNCHPIRED 780 VQLEGGLNMM SFVEATSLPV ENYIKQNGIE SLKTEQQQQG SLGSHFQSKV NRENERPLSD 840 EEFLASVGWE HVGHKEPCLE RNSLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-70 | 311 | 436 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 705 | 716 | KRRFKTLMLRKK |
2 | 705 | 718 | KRRFKTLMLRKKKR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and at lower levels in roots, stems and leaves. {ECO:0000269|PubMed:15894743}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX581478 | 5e-78 | JX581478.1 Gossypium hirsutum clone NBRI_GE14122 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471733.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A0D2P1Z8 | 0.0 | A0A0D2P1Z8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G152700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G152700.2 |