PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G151800.1 | ||||||||
Common Name | B456_003G151800, LOC105789056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24052.3 Da PI: 8.7306 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.5 | 8.2e-42 | 40 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r da++slvyeA+ r+rdPvyG++g i +lqqq+++l+ Gorai.003G151800.1 40 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAIVTLQQQMQNLQ 130 7****************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e Gorai.003G151800.1 131 AELNAIRAE 139 ****99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.85 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.8E-42 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MSRDRERLDE IGKKIKTDAV GEMGRRHLLG PPGTLNTITP CAACKLLRRR CAEECPFSPY 60 FSPHEPHKFA AVHKVFGASN VSKMLMEVPE SQRADAANSL VYEANLRLRD PVYGCMGAIV 120 TLQQQMQNLQ AELNAIRAEI LKYKIREVTN SNILPSTHPH THTHATLVSG GAVSVAASSS 180 PLPPPPSIVV STSSSSSASS LYTSATSATG YSSISSDNVP FFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-44 | 32 | 148 | 3 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-44 | 32 | 148 | 3 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471717.1 | 1e-165 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 2e-81 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A0D2RN13 | 1e-164 | A0A0D2RN13_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G151800.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-82 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G151800.1 |
Entrez Gene | 105789056 |
Publications ? help Back to Top | |||
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