PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G143600.1
Common NameB456_003G143600, LOC105788965
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 695aa    MW: 76853 Da    PI: 6.892
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G143600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-094935301954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Gorai.003G143600.1 493 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 530
                         564459******************************87 PP
2BELL98.94.1e-32354421471
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                         e q+kkakLl l+eeV++rYk y++q+q+v+ssFe vagl sa+pY+slAlk++ ++Frc+k+ai+++
  Gorai.003G143600.1 354 EYQQKKAKLLYLQEEVYRRYKLYYQQMQMVVSSFESVAGLSSATPYVSLALKTVEKNFRCIKNAISDR 421
                         89***************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-39258420IPR006563POX domain
PfamPF075264.2E-38263419IPR006563POX domain
PROSITE profilePS5007112.179471534IPR001356Homeobox domain
SMARTSM003891.8E-8474538IPR001356Homeobox domain
CDDcd000867.74E-12474535No hitNo description
SuperFamilySSF466895.13E-17475540IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-27477538IPR009057Homeodomain-like
PfamPF059203.2E-18491530IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MSFLGMDMSK FKLESHVAQQ SRRDKLRVHH LGLNPDLVQV RNVRNANLLY DPTFVSPHQE  60
LTEDEESRSR QMPANGSCKV PGDPQSCGDW VMGYGINQNP MFDAAMGYPK PNYSEFCSQD  120
SKRHCGELHF VSSSSLYDVT TASLGTQGLE MASTAHQASA WLCGNGGGAW TNIRPVLEDD  180
QQWADAGTNT TQGLSLTLSS NTTCGAAQFT EDQCCSHRFK ESQDSKALNP AHLYSMQKPS  240
IISKGSGNST CVPLGPFTGY ATILKNSKFL KPAQQLLDQY CHVANSKLAK VCETSDAVIG  300
DIGDLASADD ANAVDMEDRA IKGNNSGASI SSFCSSNEIS VAVGIGSSSS CRPEYQQKKA  360
KLLYLQEEVY RRYKLYYQQM QMVVSSFESV AGLSSATPYV SLALKTVEKN FRCIKNAISD  420
RVRHICRALG EDLLSSTTGA SSSKGDINMS RLKYEVQKSG GVNVGFLEPQ QQGWRPQRGL  480
PERAVAILRA WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH  540
MLESKGLAEN NLNSSKTTEA KSSSTNRPNE DQPIDRSCIN VTSMEQLTCS YVAVAETTGD  600
AHDAERWFHD KPLRMDFRIP TSMEGSLLSF APYEQSRLEM RGLGAVSLTL GLRHGAETAQ  660
AQQHQHQHRQ QQYQSQEDQL QRPFGGQMVH DFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16480538563Homeobox protein Meis2
4xrm_B4e-16480538563Homeobox protein Meis2
4xrs_A3e-16480537158Homeobox protein Meis1
4xrs_B3e-16480537158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5807346e-71JX580734.1 Gossypium hirsutum clone NBRI_GE13227 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471548.10.0PREDICTED: BEL1-like homeodomain protein 8
RefseqXP_012471549.10.0PREDICTED: BEL1-like homeodomain protein 8
RefseqXP_012471550.10.0PREDICTED: BEL1-like homeodomain protein 8
RefseqXP_012471551.10.0PREDICTED: BEL1-like homeodomain protein 8
TrEMBLA0A0D2MNQ90.0A0A0D2MNQ9_GOSRA; Uncharacterized protein
STRINGGorai.003G143600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.16e-83BEL1-like homeodomain 8
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]