PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G139800.2
Common NameB456_003G139800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 378aa    MW: 42173.9 Da    PI: 7.992
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G139800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.3e-17153202155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gorai.003G139800.2 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202
                         78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-9153202IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16153210IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-17154210IPR001471AP2/ERF domain
SMARTSM003803.4E-31154216IPR001471AP2/ERF domain
PROSITE profilePS5103217.899154210IPR001471AP2/ERF domain
CDDcd000181.65E-11154209No hitNo description
SMARTSM003800.015239302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MLDLNLNVAS PESTQGLDSV APFTDELINE GSRNQMDESG TSNSSIVNED GESCSTRASG  60
EAFTLSFDIL KVGRESRNHE AALVVTRELF PVKGIGADFG SSEGQSSGNS SNKSKWIDLS  120
FERKEAAAEP RVMQQQPLQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVDADINFS LCDYEDDMKQ TKDLSKEEFV HVLRRQSAGF  240
RGKLEISRSN VAQMRQVGST DGAVPRQKVR YLFLGKRAYD RAAIKSNGRE AVTNFELSTY  300
EGEMVFDTRN KGNSHNLDLN LGISPPVSDG PKEKENAGHL QMNNGKSLRV TFESNYFEFT  360
CMFHHIGNLV LQRTIEY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.29481e-144flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487989331e-144
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471462.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK038e-93RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0D2MNJ90.0A0A0D2MNJ9_GOSRA; Uncharacterized protein
STRINGGorai.003G139800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-92related to AP2.7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]