PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G136400.1
Common NameB456_003G136400, LOC105788885
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 274aa    MW: 31162.1 Da    PI: 8.6785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G136400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171057148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ed  lv+ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Gorai.003G136400.1 10 KGPWTEQEDAVLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                        79********************************************97 PP
2Myb_DNA-binding47.83.3e-1563108148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         r +++ +E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Gorai.003G136400.1  63 REKMSLQEQRLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                         678999****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.923557IPR017930Myb domain
SMARTSM007172.8E-15959IPR001005SANT/Myb domain
SuperFamilySSF466899.54E-299104IPR009057Homeodomain-like
PfamPF002499.5E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-201164IPR009057Homeodomain-like
CDDcd001679.19E-111257No hitNo description
PROSITE profilePS5129424.81158112IPR017930Myb domain
SMARTSM007178.8E-1562110IPR001005SANT/Myb domain
PfamPF002491.8E-1363107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-2165111IPR009057Homeodomain-like
CDDcd001672.33E-1065108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKAEQEETRK GPWTEQEDAV LVNFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKREKMSLQE QRLVLELHAK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKKAMP  120
KSLSPSSSSS SSSSSITLSS SSSTTTTTTT TTTVDSLPFS GTGKVSFYDT GGPKMAALGD  180
KSSTDFKDEK GYYSMDDIWK DIDMSEENMI KPLSHNYSEE GCNIFCPSMA SPSLDYCWDS  240
LWKMDDEDSK MFLPFSQSIS CFEYGTSFFN KIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2771121105MYB PROTO-ONCOGENE PROTEIN
1h88_C7e-27711255159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-27711255159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27101124105C-Myb DNA-Binding Domain
1msf_C2e-27101124105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591431e-69AJ459143.1 Gossypium hirsutum partial myb115c gene, clone pGhMYB115c.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471406.10.0PREDICTED: transcription factor MYB59 isoform X1
SwissprotQ9LX824e-95MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A0D2MNF80.0A0A0D2MNF8_GOSRA; Uncharacterized protein
STRINGGorai.003G136400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25022774
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.17e-87myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]