PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G133200.2

Common Name

B456_003G133200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 277aa MW: 29865.2 Da PI: 9.4104

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G133200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk++ Gorai.003G133200.2 66 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKNK 126 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-34	50	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-33	69	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.702	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MVFSSLPVYL DPPNWQQHND HQQGTGGSEN PQLPPPPPHV GAGGGTIAIR PSSMADRARL 60 AKVPQPEAAL KCPRCDSTNT KFCYFNNYSL SQPRHFCKAC RRYWTRGGAL RNVPVGGGCR 120 RNKKNKSSTS SKSPASTQKQ AEVITAHNLP QQTPHLPFMA SLQSFSQYGL GNIGLNYGGS 180 GQADIGFPLF EPSNGLYPFE SEGIEASSSS MVGESQFLGS MISSSRASQL APPMKTENNN 240 NNNKGLNPSR PQLGISENNQ YWGGNSWTDI SANHLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471355.1	0.0	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A0D2P0N0	0.0	A0A0D2P0N0_GOSRA; Uncharacterized protein
STRING	Gorai.003G133200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	1e-45	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Gorai.003G133200.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]