PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G133200.1 | ||||||||
Common Name | B456_003G133200, LOC105788841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 278aa MW: 29993.4 Da PI: 9.4104 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.8 | 1.3e-39 | 67 | 127 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk++ Gorai.003G133200.1 67 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKNK 127 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-34 | 51 | 122 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-33 | 70 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.702 | 71 | 125 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 73 | 109 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MVFSSLPVYL DPPNWQQQHN DHQQGTGGSE NPQLPPPPPH VGAGGGTIAI RPSSMADRAR 60 LAKVPQPEAA LKCPRCDSTN TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC 120 RRNKKNKSST SSKSPASTQK QAEVITAHNL PQQTPHLPFM ASLQSFSQYG LGNIGLNYGG 180 SGQADIGFPL FEPSNGLYPF ESEGIEASSS SMVGESQFLG SMISSSRASQ LAPPMKTENN 240 NNNNKGLNPS RPQLGISENN QYWGGNSWTD ISANHLL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471355.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
TrEMBL | A0A0D2QJV7 | 0.0 | A0A0D2QJV7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G133200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 1e-47 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G133200.1 |
Entrez Gene | 105788841 |
Publications ? help Back to Top | |||
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