PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G133200.1
Common NameB456_003G133200, LOC105788841
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 278aa    MW: 29993.4 Da    PI: 9.4104
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G133200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-3967127262
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                         +e+alkcprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk++
  Gorai.003G133200.1  67 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKNK 127
                         67899*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-3451122IPR003851Zinc finger, Dof-type
PfamPF027013.4E-3370125IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.70271125IPR003851Zinc finger, Dof-type
PROSITE patternPS01361073109IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVFSSLPVYL DPPNWQQQHN DHQQGTGGSE NPQLPPPPPH VGAGGGTIAI RPSSMADRAR  60
LAKVPQPEAA LKCPRCDSTN TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC  120
RRNKKNKSST SSKSPASTQK QAEVITAHNL PQQTPHLPFM ASLQSFSQYG LGNIGLNYGG  180
SGQADIGFPL FEPSNGLYPF ESEGIEASSS SMVGESQFLG SMISSSRASQ LAPPMKTENN  240
NNNNKGLNPS RPQLGISENN QYWGGNSWTD ISANHLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471355.10.0PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A0D2QJV70.0A0A0D2QJV7_GOSRA; Uncharacterized protein
STRINGGorai.003G133200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-47OBF-binding protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]