PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G130600.1

Common Name

B456_003G130600, LOC105788811

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 770aa MW: 86043.9 Da PI: 6.6952

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G130600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.1	6.7e-117	396	766	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL+ cA+a++s+d+ a++l++++++++sp+gd qRla+yf+ AL+arla++++++y +l +++ts ++ l+a++++ v+P++ Gorai.003G130600.1 396 LRTLLILCAQAITSNDNVTAKELIKQIRQHSSPYGDGSQRLAHYFVDALEARLAGTGTQIYTSLIAKRTS---AADMLKAYQVYISVCPFV 483 5789**********************************************************999998...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+ + aN+ I +a+e+++++HiiDf+i +G++WpaL++ La+Rp+gpp+lRiTg++ p++g +e+++etg+rL k++e+ +vpfe+++ Gorai.003G130600.1 484 KVPIIFANNYISKAAEKATKLHIIDFGIFYGFHWPALIHRLANRPGGPPKLRITGIEFPQPGfrPAEAVQETGRRLVKYCERYNVPFEYHA 574 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +a+++e++++e+L+++++E++aVn+ + +llde+v l+s+rd+vL+l+++++P+v+v++ + ++n++ F++rf eal ++salfd+ Gorai.003G130600.1 575 -IAQKWETIRTEDLKINSDEVIAVNCLCRFRNLLDETVVLNSPRDTVLNLIRKINPDVFVHSVVNGSYNAPFFVTRFREALFHFSALFDMC 664 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+++++e++ r+++E+++ grei+n++aceg+er+er e++++W+ r ++aGF ++pl+ + +k +k ++ + ++v+ + ++++gW Gorai.003G130600.1 665 ETNVSHEDNMRSMLEQKFYGREIMNIIACEGTERVERPESYKQWQVRNMRAGFVQLPLNPELMKRVKERVKARYHSDFMVDVDGRWMLQGW 755 *******************************************************************999777********** PP GRAS 363 kdrpLvsvSaW 373 k+r +++ SaW Gorai.003G130600.1 756 KGRIIYASSAW 766 ********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.592	370	747	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-114	396	766	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence Send to blast
MDSHLTGFPH TVNGFKINDG YLLPNPNVYP KFEISDGVGS NDQSLDFSSL GVPFLPSLGL 60 GDSSFASILS MGSMGKEGDT FSPTDDTDVS DTVLKYISQV LLEEDMEEKP CMFHDSLALQ 120 AAEKSLYEVL GESYPPRDQA PVCVDPSVES PDNCSFGTSS DHSIHSGSSS CTSYSIESQW 180 NGDFSENNNR PSLLQTSIPE NFVFQSTVDP GSRFSSHSQN GSANNGNGFR GSPASEFLVP 240 NYFSQSELAL HFKRGFEEAS KFLPKGNQLN VGFKSNALTS ELKQKASNTV VKVESDRKEY 300 SPPRLIRKKS HEREDEDLEE RNNKQSAVLG DESELSDMFD KVLICAGRRG QSSSSTADET 360 LPNGPSKTLL PNEQTNGSNS GKARGKKQGK KKVVDLRTLL ILCAQAITSN DNVTAKELIK 420 QIRQHSSPYG DGSQRLAHYF VDALEARLAG TGTQIYTSLI AKRTSAADML KAYQVYISVC 480 PFVKVPIIFA NNYISKAAEK ATKLHIIDFG IFYGFHWPAL IHRLANRPGG PPKLRITGIE 540 FPQPGFRPAE AVQETGRRLV KYCERYNVPF EYHAIAQKWE TIRTEDLKIN SDEVIAVNCL 600 CRFRNLLDET VVLNSPRDTV LNLIRKINPD VFVHSVVNGS YNAPFFVTRF REALFHFSAL 660 FDMCETNVSH EDNMRSMLEQ KFYGREIMNI IACEGTERVE RPESYKQWQV RNMRAGFVQL 720 PLNPELMKRV KERVKARYHS DFMVDVDGRW MLQGWKGRII YASSAWIPA*

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence Send to blast

MDSHLTGFPH TVNGFKINDG YLLPNPNVYP KFEISDGVGS NDQSLDFSSL GVPFLPSLGL  60
GDSSFASILS MGSMGKEGDT FSPTDDTDVS DTVLKYISQV LLEEDMEEKP CMFHDSLALQ  120
AAEKSLYEVL GESYPPRDQA PVCVDPSVES PDNCSFGTSS DHSIHSGSSS CTSYSIESQW  180
NGDFSENNNR PSLLQTSIPE NFVFQSTVDP GSRFSSHSQN GSANNGNGFR GSPASEFLVP  240
NYFSQSELAL HFKRGFEEAS KFLPKGNQLN VGFKSNALTS ELKQKASNTV VKVESDRKEY  300
SPPRLIRKKS HEREDEDLEE RNNKQSAVLG DESELSDMFD KVLICAGRRG QSSSSTADET  360
LPNGPSKTLL PNEQTNGSNS GKARGKKQGK KKVVDLRTLL ILCAQAITSN DNVTAKELIK  420
QIRQHSSPYG DGSQRLAHYF VDALEARLAG TGTQIYTSLI AKRTSAADML KAYQVYISVC  480
PFVKVPIIFA NNYISKAAEK ATKLHIIDFG IFYGFHWPAL IHRLANRPGG PPKLRITGIE  540
FPQPGFRPAE AVQETGRRLV KYCERYNVPF EYHAIAQKWE TIRTEDLKIN SDEVIAVNCL  600
CRFRNLLDET VVLNSPRDTV LNLIRKINPD VFVHSVVNGS YNAPFFVTRF REALFHFSAL  660
FDMCETNVSH EDNMRSMLEQ KFYGREIMNI IACEGTERVE RPESYKQWQV RNMRAGFVQL  720
PLNPELMKRV KERVKARYHS DFMVDVDGRW MLQGWKGRII YASSAWIPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-55	403	768	25	379	Protein SCARECROW
5b3h_D	3e-55	403	768	25	379	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471313.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A0D2QK26	0.0	A0A0D2QK26_GOSRA; Uncharacterized protein
STRING	Gorai.003G130600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Gorai.003G130600.1
Entrez Gene	105788811

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]