PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G130500.1
Common NameB456_003G130500, LOC105788810
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 761aa    MW: 85791 Da    PI: 4.9991
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G130500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.44.4e-1093837571373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL+ cA+avs++d + a++lL++++e++sp gd++qRla  f+ +L+arl +s+  +    ++ +++ ++ ++ l+a+k++   +P+ 
  Gorai.003G130500.1 383 LRTLLILCAQAVSADDRRTASELLKQIKEHSSPLGDANQRLAYIFADGLEARLDGSGALIHVFYASLASKMTTAADILKAYKAYLCSCPFT 473
                         5789***************************************************777776666777777777****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k++ l aN+ I+  +e+++ +Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+ g   +e++eetg+rLak++e+++vpfe+n+
  Gorai.003G130500.1 474 KLAILFANKSIYHMAEKASVLHIVDFGILYGFQWPILIQHLSTRPGGPPKLRITGIEIPQRGfrPAERIEETGRRLAKYCERFNVPFEYNP 564
                         ************************************************************99***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                         ++++++e++++e+++++++E+laVn+ ++ h+llde+++++ +r+++Lkl+++++P+++v++  +  +n++ F++rf e l + sa+fd +
  Gorai.003G130500.1 565 IAVEHWETIQIEDIKIDSNEMLAVNSLFRFHNLLDETADVDCPRNAMLKLIRKMKPDIFVHSIVNGAYNAPFFVTRFKEVLFHISAVFDVF 655
                         ******************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e++lpre+ +r + Ere+ gre++nv+aceg++r++r et+++W+ r  + GFkp+pl+++ +k ++  l+  + + + ++e+++++++gW
  Gorai.003G130500.1 656 ENTLPREEPARLMFEREFYGREAMNVIACEGSARVQRPETYKQWQIRTLREGFKPLPLDQELMKIIRDKLKAWYHKDFVIDEDNHWMLQGW 746
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaW 373
                         k+r L+  S+W
  Gorai.003G130500.1 747 KGRILYGSSCW 757
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.956357738IPR005202Transcription factor GRAS
PfamPF035141.5E-106383757IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MTMDPNSIEI SDYLNCFKVE DHTFHNGFEF NVPSPDLNFM NMKVPIIPPD SDPGINVPSI  60
TASSDGSSFS ASSGWSPLGE SYSPPSDNDS TDPVLKYISQ MLMEENMEDK PYMFNDYLAL  120
EDTEKSLYDA LVSNIIQPVK VESPDSNLFG TNGHSDASIS SRSGTSDHID PRGIGEGGWP  180
DPSLLQAPYS LQPDLQQSSS QFSVDSVNSL SNIGNGLMES SVSELLVKNI FSDKESVLQF  240
QRGFEEASKF IPSSEQLVID LESSTFAVGK KVDVPKVVVK VEKDEREISS NGLTGRKNHE  300
RDDWELEDER SNKQSATYTE ESDLSEVFDK VLLCTEGKTM CGIDQTVRHG ETDSSQHKEQ  360
LDGSIVGRNR SKRRGKKKEV VDLRTLLILC AQAVSADDRR TASELLKQIK EHSSPLGDAN  420
QRLAYIFADG LEARLDGSGA LIHVFYASLA SKMTTAADIL KAYKAYLCSC PFTKLAILFA  480
NKSIYHMAEK ASVLHIVDFG ILYGFQWPIL IQHLSTRPGG PPKLRITGIE IPQRGFRPAE  540
RIEETGRRLA KYCERFNVPF EYNPIAVEHW ETIQIEDIKI DSNEMLAVNS LFRFHNLLDE  600
TADVDCPRNA MLKLIRKMKP DIFVHSIVNG AYNAPFFVTR FKEVLFHISA VFDVFENTLP  660
REEPARLMFE REFYGREAMN VIACEGSARV QRPETYKQWQ IRTLREGFKP LPLDQELMKI  720
IRDKLKAWYH KDFVIDEDNH WMLQGWKGRI LYGSSCWVPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-453727598380Protein SCARECROW
5b3h_A5e-453727597379Protein SCARECROW
5b3h_D5e-453727597379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1367372RNRSKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012471312.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0D2P0T70.0A0A0D2P0T7_GOSRA; Uncharacterized protein
STRINGGorai.003G130500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]