PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G119600.2 | ||||||||
Common Name | B456_003G119600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 623aa MW: 68700.2 Da PI: 6.9675 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68 | 1.9e-21 | 530 | 610 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev++Li++r ++++r++ k +++lWee+s + e g++rsp qCk+ w +l ++y++ k+ ++++ +++pyf++++ Gorai.003G119600.2 530 KWKPEEVKKLIKMRGDLHSRFQVVKGRMALWEEISTSLLEDGITRSPAQCKSLWASLVQKYEESKNEKRSH-----KSWPYFEDMN 610 7****************************************************************999996.....57******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 4.1E-8 | 25 | 88 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 2.48E-21 | 25 | 253 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 1.0E-5 | 194 | 225 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 7.909 | 523 | 587 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-5 | 526 | 589 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.8E-18 | 528 | 611 | No hit | No description |
CDD | cd12203 | 1.43E-22 | 529 | 594 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MKITLVIPAL DPHTPIYASS FTMEMMSDST NVLSPGRTIS ESAVADALSR HISGAKGRII 60 TTQFASNIHR LGSIKAAADV TGRKLVFIGM SLRTYLDAAW KDGKAPIDPS TLVKAEDIDA 120 YAPKDLIIVT TGSQAEPRAA LNLASYGSSH SFKLNKEDVI LYSAKVIPGN ESRVMKMLNR 180 ISEIGSTIVM GKNEGLHTSG HGYRGELEEV LQIVKPQHFL PIHGELLFLK EHELLGKSTG 240 IRHTTVIKNG EMLGVSHLRN RRVLSNGFSS LGKENLQLMY SDGDKAFGTS TELCVDERLR 300 IASDGIIVVS MEILRPQKID GMVENTLKGK IKITTRCLWL DKGKLLDTLH KAAHATLSSC 360 PVNCPLAHME RTVSEVLRKT VRKYSGKRPE VIAIALENPA GVLSDELNEN LSGNYNAGFG 420 LPTLRKVVDG HPRRGPPNKM KVEDDGILHL ENASEHSLLD DDAEAERFLP VEDTSTSIPD 480 YTERLTPNTD DSDELEEHEP EVKGDGTASN GDDSEMTGSQ PKSSKPKRNK WKPEEVKKLI 540 KMRGDLHSRF QVVKGRMALW EEISTSLLED GITRSPAQCK SLWASLVQKY EESKNEKRSH 600 KSWPYFEDMN KVLSDFEATA TT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zq4_A | 1e-35 | 25 | 313 | 192 | 473 | RIBONUCLEASE J 1 |
3zq4_C | 1e-35 | 25 | 313 | 192 | 473 | RIBONUCLEASE J 1 |
3zq4_D | 1e-35 | 25 | 313 | 192 | 473 | RIBONUCLEASE J 1 |
3zq4_E | 1e-35 | 25 | 313 | 192 | 473 | RIBONUCLEASE J 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During the early stages of embryo development, first observed at the transition stage. In the heart and torpedo stages, predominantly present in the upper part of embryos. In seedlings, strongly expressed in shoot meristems, hypocotyls, in the vascular bundles of cotyledons, and in the veins of mature leaves. In reproductive organs, detected in inflorescences, especially in sepals, filaments, and stigmas, as well as in mature siliques and seeds. {ECO:0000269|PubMed:25871650}. | |||||
Uniprot | TISSUE SPECIFICITY: Moslty expressed in inflorescences, seedlings, leaves, flowers and flower buds, and, to a lower extent, in stems, siliques and roots. {ECO:0000269|PubMed:25871650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471114.1 | 0.0 | PREDICTED: uncharacterized protein LOC105788673 isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A0D2MMS3 | 0.0 | A0A0D2MMS3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G119600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G119600.2 |
Publications ? help Back to Top | |||
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