PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G114100.2

Common Name

B456_003G114100, LOC105788606

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 295aa MW: 34598.7 Da PI: 6.9193

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G114100.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.1e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eelv++yL+kk++ ++++l +vik+vd+yk+ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+ Gorai.003G114100.2 7 VPPGFRFHPTEEELVDYYLRKKISLRRIDL-DVIKDVDLYKIEPWDLQEicRIGReEQNEWYFFSHKDKKYPTGSRTNRATAAGFWKATGR 96 69**************************.9***********954544432566**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Gorai.003G114100.2 97 DKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 **.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-60	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.774	7	156	IPR003441	NAC domain
Pfam	PF02365	5.2E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MNVLPQVPPG FRFHPTEEEL VDYYLRKKIS LRRIDLDVIK DVDLYKIEPW DLQEICRIGR 60 EEQNEWYFFS HKDKKYPTGS RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETYEN GTPQDEGWVV CRVFKKRITA MRKVGEHESS CWYDDQVSFI 180 PDLDSPNQTS LSNNAYHHLP YSCKKELDLQ YQVPHDHYLQ SRDPLSCNPM AAFGQCSSFT 240 QDHHIQQTHH QHLNALFGNH SNEQAVDQAT DWRLLDTLVA SQLSQEEEIY RQSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	7	162	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	7	162	20	174	NAC domain-containing protein 19
3swm_B	1e-49	7	162	20	174	NAC domain-containing protein 19
3swm_C	1e-49	7	162	20	174	NAC domain-containing protein 19
3swm_D	1e-49	7	162	20	174	NAC domain-containing protein 19
3swp_A	1e-49	7	162	20	174	NAC domain-containing protein 19
3swp_B	1e-49	7	162	20	174	NAC domain-containing protein 19
3swp_C	1e-49	7	162	20	174	NAC domain-containing protein 19
3swp_D	1e-49	7	162	20	174	NAC domain-containing protein 19
4dul_A	1e-49	7	162	17	171	NAC domain-containing protein 19
4dul_B	1e-49	7	162	17	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.
Uniprot	TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:17565617, ECO:0000269\|PubMed:18445131, ECO:0000269\|PubMed:25148240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012471021.1	0.0	PREDICTED: NAC domain-containing protein 7
Refseq	XP_012471022.1	0.0	PREDICTED: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-123	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A0D2MMJ7	0.0	A0A0D2MMJ7_GOSRA; Uncharacterized protein
STRING	Gorai.003G114100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-122	NAC 007

Link Out ? help Back to Top
Phytozome	Gorai.003G114100.2
Entrez Gene	105788606

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]