PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G103100.1 | ||||||||
Common Name | B456_003G103100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 331aa MW: 35771.4 Da PI: 6.8568 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.2e-38 | 34 | 94 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+ Gorai.003G103100.1 34 NNQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 94 6799*****************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.7E-33 | 36 | 92 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-27 | 37 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.506 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MQDIHLIGGG RVFSSGGGGG GGDRRLRLQH QQQNNQALKC PRCDSLNTKF CYYNNYNLSQ 60 PRHFCKSCRR YWTKGGVLRN VPVGGGCRKA KRSKTKPSSE STTVAAAAPA QPQSQQLLDQ 120 RKANSHSSSD SSSLIAANSN VAVANKNNND SSTGGMAEAV SAVTSHSNNI NVSESKLYGN 180 PNNLVFEAGL LEQGSESGVF PEIGSFTSLV TSSNNETSSL GFGTVLNGQG QWQQQKMMSV 240 GGEEITGELL DQTMQVELSN LHGRSESGFG PLDWQGCGDQ PFLDLANDVD QSYWSQSQWS 300 DQDHTALYLP ILLMAYLNSI NVEKNIDFRF * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 2e-35 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 2e-35 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470854.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A0D2MM20 | 0.0 | A0A0D2MM20_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G103100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4482 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 1e-39 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G103100.1 |
Publications ? help Back to Top | |||
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