PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G103100.1
Common NameB456_003G103100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 331aa    MW: 35771.4 Da    PI: 6.8568
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G103100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-383494262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s+
  Gorai.003G103100.1 34 NNQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSK 94
                        6799*****************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.7E-333692IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-273792IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5063892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MQDIHLIGGG RVFSSGGGGG GGDRRLRLQH QQQNNQALKC PRCDSLNTKF CYYNNYNLSQ  60
PRHFCKSCRR YWTKGGVLRN VPVGGGCRKA KRSKTKPSSE STTVAAAAPA QPQSQQLLDQ  120
RKANSHSSSD SSSLIAANSN VAVANKNNND SSTGGMAEAV SAVTSHSNNI NVSESKLYGN  180
PNNLVFEAGL LEQGSESGVF PEIGSFTSLV TSSNNETSSL GFGTVLNGQG QWQQQKMMSV  240
GGEEITGELL DQTMQVELSN LHGRSESGFG PLDWQGCGDQ PFLDLANDVD QSYWSQSQWS  300
DQDHTALYLP ILLMAYLNSI NVEKNIDFRF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818132e-35LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132562e-35LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470854.10.0PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBLA0A0D2MM200.0A0A0D2MM20_GOSRA; Uncharacterized protein
STRINGGorai.003G103100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44822656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.11e-39OBF binding protein 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]