PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G102800.1
Common NameB456_003G102800, LOC105788474
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SBP
Protein Properties Length: 526aa    MW: 57117.3 Da    PI: 7.0005
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G102800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.66.4e-42176251277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cqv gC++dl++ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q
  Gorai.003G102800.1 176 CQVYGCNKDLTSSKDYHKRHKVCEAHSKTEKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 251
                         **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.2E-34169237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.376173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.14E-39174253IPR004333Transcription factor, SBP-box
PfamPF031104.3E-32176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MESWSYVSGE NGSESDAANS ASDSFVRNRN AFMNLEFKGP YSFSNNMIVS GQQTIESHGF  60
GELGYGELIG KQLTNGSIGD VLSSKVSEAR TENPILATLN TFSVDDESSS MLSSSVVDSN  120
SRDSLLIDLK LGRFPDYIDG QSSSLSIGAP ILSSCESSTP PKRVRAAGAN SHTAYCQVYG  180
CNKDLTSSKD YHKRHKVCEA HSKTEKVIVN GIEQRFCQQC SRFHLLAEFD DGKRSCRKRL  240
AGHNERRRKP QVGIRYGRTG RLLQPYNGFA GGRFQGTMLT NTSFICQNVR TSGLLHPEKY  300
VTNEWGKRIK VEDGTDFSPL SAIPVKNGGH FEKHFPYFHN GPSAVTGGIL GENNARYPHG  360
FDGTYSGSRP LFQGTSSSAS EDINVFDAAL SIQGLSGISD SVCALSLLSS QSHSSSSHSS  420
GIPMARSLVI PGYHNHHMTQ VSEKLDRVLN TISSSGINST EGSNMGAILI SDSSEAANFN  480
ITDGLSCKDG PTINLLQLSS QLQRVEHQRQ SMQEDNENET CLRII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-291762491184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.15880.0flower| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO488200330.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6223140.0KJ622314.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470847.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_012470849.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A0D2MM140.0A0A0D2MM14_GOSRA; Uncharacterized protein
STRINGGorai.003G102800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14770918
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-51SBP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]