PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G099500.1

Common Name

B456_003G099500, LOC105788441

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 422aa MW: 46259.6 Da PI: 7.633

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G099500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.5	6.4e-15	228	273	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRR+ri++++++L++l+P+a K +Ka++L +++eY+k+Lq Gorai.003G099500.1 228 HNLSERRRRHRIKQKMNTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 273 9**********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-18	221	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.212	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-18	228	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-12	228	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.19E-15	228	277	No hit	No description
SMART	SM00353	1.0E-16	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MSHCVAPNCW NLKHQSQEQV HFVEEEDNET NRSSHISNPM SNQEVAELTW QNGQLAFHGL 60 NRHLPTASSK PTWGISGDTL ESIVHQATCL HTQNHNFSLL QHDQNQTPAV VSSIAASSGS 120 SGRLPTAAVV KKRARSSSDV CGEIPRGGVG KEYASACASA SDAFCKENDD STMMTWASHL 180 SPQTMKAKAV DEDYAYQDGS ENQDEEQETR GETGRSQATR RSRASAIHNL SERRRRHRIK 240 QKMNTLQKLV PNASKTDKAS MLDEVIEYLK QLQTQVEMMS MRNMAAQMMM QQTRRQLQMS 300 ALARMGVGMG IGILDDNNSL APNPSPVTAP TRTFLPPPPP PPSFVTPPPM IPTRFAAAAQ 360 ANSDASSHGS IPSPDPYCTL LAQSMNMELY NNKMAAPYRP QINQTTQTSS NPSRSNNVAK 420 D*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MSHCVAPNCW NLKHQSQEQV HFVEEEDNET NRSSHISNPM SNQEVAELTW QNGQLAFHGL  60
NRHLPTASSK PTWGISGDTL ESIVHQATCL HTQNHNFSLL QHDQNQTPAV VSSIAASSGS  120
SGRLPTAAVV KKRARSSSDV CGEIPRGGVG KEYASACASA SDAFCKENDD STMMTWASHL  180
SPQTMKAKAV DEDYAYQDGS ENQDEEQETR GETGRSQATR RSRASAIHNL SERRRRHRIK  240
QKMNTLQKLV PNASKTDKAS MLDEVIEYLK QLQTQVEMMS MRNMAAQMMM QQTRRQLQMS  300
ALARMGVGMG IGILDDNNSL APNPSPVTAP TRTFLPPPPP PPSFVTPPPM IPTRFAAAAQ  360
ANSDASSHGS IPSPDPYCTL LAQSMNMELY NNKMAAPYRP QINQTTQTSS NPSRSNNVAK  420
D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470806.1	0.0	PREDICTED: transcription factor PIF7 isoform X2
TrEMBL	A0A0D2QQZ7	0.0	A0A0D2QQZ7_GOSRA; Uncharacterized protein
STRING	Gorai.003G099500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3919	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	2e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G099500.1
Entrez Gene	105788441

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]