PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G093600.2

Common Name

B456_003G093600, LOC105788383

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 721aa MW: 78251.9 Da PI: 6.8708

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G093600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Gorai.003G093600.2 302 PCPDFHK-GACRRGDICEYAHG 322 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	8.5E-18	44	180	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.49E-16	45	165	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	7.7E-10	82	156	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.61E-15	86	165	No hit	No description
SMART	SM00248	0.0052	87	117	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	17.794	87	163	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	12.342	122	157	IPR002110	Ankyrin repeat
SMART	SM00248	0.0019	122	154	IPR002110	Ankyrin repeat
SMART	SM00356	8.9E-4	297	323	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-4	302	322	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.389	302	324	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	330	361	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	36	332	355	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MCCGSEPINH SSNPTRSNNS FGDNRHPSVE MNRLTVETED IFATLLELAA NNDVEGFKRT 60 IEHDPSVVDE VGLWYGRRKG SKQMVHDERT PLMIAATYGS IGVIKLILSS SDADVNRVCG 120 HEKSTALHCA ASGGTINAVD VVKLLLAAGA DANMVDANGH RPVDVIGFPL KLQAVKLTLQ 180 ELLGTESSVI EQNLRVSTAV ANSGSLSPSR DNGSPSCSNS LPKLKSTAAP ISTSEKKEYP 240 IDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFHKGA CRRGDICEYA HGVFECWLHP AQYRTRLCKD GINCARRVCF FAHTAEELRP 360 LHVSTGSAVL SPRSSTSAAT AMDFAAALSL LPGSPSSVSV MSPSPFTPPI SPSVKGMPHS 420 NVAWPQPNVP ALHLPGSNLQ LSRLRSFLNA RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ 480 PSMSSNSMNR SGRLKTLTPS NLEDLFSTES SSSQYSDQAL AAVVFSPSHK SAVLNQFQQQ 540 SSMLSPINTN FSPKSNEYPL LQASLSGRMS PRNVEPISPM SSRVSMLAQL EKQQFRSLSS 600 RELGSSSPAI IGSPVNSWSK WGSSNGKADW AVNADELGKH HASFELSNGD EPELSWVQSL 660 VKESPTEMKE KMKASVSGVP SNASKSEGSN TNSQVDPLDH TVLGAWLEQM QLDQLVALQN 720 *

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MCCGSEPINH SSNPTRSNNS FGDNRHPSVE MNRLTVETED IFATLLELAA NNDVEGFKRT  60
IEHDPSVVDE VGLWYGRRKG SKQMVHDERT PLMIAATYGS IGVIKLILSS SDADVNRVCG  120
HEKSTALHCA ASGGTINAVD VVKLLLAAGA DANMVDANGH RPVDVIGFPL KLQAVKLTLQ  180
ELLGTESSVI EQNLRVSTAV ANSGSLSPSR DNGSPSCSNS LPKLKSTAAP ISTSEKKEYP  240
IDPSLPDIKN SIYSTDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFHKGA CRRGDICEYA HGVFECWLHP AQYRTRLCKD GINCARRVCF FAHTAEELRP  360
LHVSTGSAVL SPRSSTSAAT AMDFAAALSL LPGSPSSVSV MSPSPFTPPI SPSVKGMPHS  420
NVAWPQPNVP ALHLPGSNLQ LSRLRSFLNA RDIPAEDFNL LPDFGVQQQQ LVNELSSLSQ  480
PSMSSNSMNR SGRLKTLTPS NLEDLFSTES SSSQYSDQAL AAVVFSPSHK SAVLNQFQQQ  540
SSMLSPINTN FSPKSNEYPL LQASLSGRMS PRNVEPISPM SSRVSMLAQL EKQQFRSLSS  600
RELGSSSPAI IGSPVNSWSK WGSSNGKADW AVNADELGKH HASFELSNGD EPELSWVQSL  660
VKESPTEMKE KMKASVSGVP SNASKSEGSN TNSQVDPLDH TVLGAWLEQM QLDQLVALQN  720
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	82	GRRKGSKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470719.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_012470720.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0D2QQN5	0.0	A0A0D2QQN5_GOSRA; Uncharacterized protein
STRING	Gorai.003G093600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Gorai.003G093600.2
Entrez Gene	105788383

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]