PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G091500.1
Common NameB456_003G091500, LOC105788351
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 423aa    MW: 46849.1 Da    PI: 8.6765
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G091500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1764123155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Gorai.003G091500.1  64 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 123
                         57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-1364123IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1764132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-1565132IPR001471AP2/ERF domain
PROSITE profilePS5103220.12665131IPR001471AP2/ERF domain
SMARTSM003801.9E-2565137IPR001471AP2/ERF domain
PRINTSPR003674.2E-56677IPR001471AP2/ERF domain
PRINTSPR003674.2E-5113133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASTSSSDPG MKAEASGGEN SETVIANDQL LLCRGLKKAK KERGCTAKER ISKMPPCTAG  60
KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK  120
YWGPGTLINF PVTDYTRDLE EMQNVSREDY LASLRRKSSG FSRGISKYRG LSSRRWDSSF  180
GRVSGSEYFN SIHYGDDTTK ENDYIGGFCI ERKIDLTGYI KWWGTNKTRQ AEAGTKSSEE  240
TKNACPEDIG SELKTSEWAV QPTEPYQMPR LGTSLEGTKC KGSSVSALSI LSRSADFKSL  300
QEKALKKQEQ NSDNDENENK NTINKMDYGK AAEKSVNNDT GGDRLGAAMG MTGGLSSLQK  360
NVFPLTPFLS APLLTNYNTI DSLVDPVLWT SLVPALPTGP SRNPEVTKTE TSSTYTFFRP  420
EE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470674.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_016734840.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-171AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0D2QQL80.0A0A0D2QQL8_GOSRA; Uncharacterized protein
TrEMBLA0A1U8N7A10.0A0A1U8N7A1_GOSHI; AP2-like ethylene-responsive transcription factor At2g41710
STRINGGorai.003G091500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-160AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]